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Local Connectivity and Synaptic Dynamics in Mouse and Human Neocortex

View ORCID ProfileLuke Campagnola, View ORCID ProfileStephanie C Seeman, View ORCID ProfileThomas Chartrand, View ORCID ProfileLisa Kim, View ORCID ProfileAlex Hoggarth, View ORCID ProfileClare Gamlin, View ORCID ProfileShinya Ito, View ORCID ProfileJessica Trinh, View ORCID ProfilePasha Davoudian, Cristina Radaelli, View ORCID ProfileMean-Hwan Kim, View ORCID ProfileTravis Hage, View ORCID ProfileThomas Braun, View ORCID ProfileLauren Alfiler, Juia Andrade, Phillip Bohn, View ORCID ProfileRachel Dalley, Alex Henry, View ORCID ProfileSara Kebede, View ORCID ProfileAlice Mukora, David Sandman, View ORCID ProfileGrace Williams, Rachael Larsen, Corinne Teeter, View ORCID ProfileTanya L. Daigle, Kyla Berry, Nadia Dotson, View ORCID ProfileRachel Enstrom, Melissa Gorham, View ORCID ProfileMadie Hupp, Samuel Dingman Lee, Kiet Ngo, View ORCID ProfileRusty Nicovich, View ORCID ProfileLydia Potekhina, Shea Ransford, View ORCID ProfileAmanda Gary, View ORCID ProfileJeff Goldy, View ORCID ProfileDelissa McMillen, View ORCID ProfileTrangthanh Pham, View ORCID ProfileMichael Tieu, View ORCID ProfileLa’Akea Siverts, View ORCID ProfileMiranda Walker, View ORCID ProfileColin Farrell, Martin Schroedter, View ORCID ProfileCliff Slaughterbeck, View ORCID ProfileCharles Cobb, View ORCID ProfileRichard Ellenbogen, View ORCID ProfileRyder P Gwinn, C. Dirk Keene, Andrew L Ko, View ORCID ProfileJeffrey G Ojemann, Daniel L Silbergeld, View ORCID ProfileDaniel Carey, View ORCID ProfileTamara Casper, View ORCID ProfileKirsten Crichton, View ORCID ProfileMichael Clark, View ORCID ProfileNick Dee, View ORCID ProfileLauren Ellingwood, View ORCID ProfileJessica Gloe, View ORCID ProfileMatthew Kroll, View ORCID ProfileJosef Sulc, View ORCID ProfileHerman Tung, View ORCID ProfileKatherine Wadhwani, View ORCID ProfileKrissy Brouner, View ORCID ProfileTom Egdorf, View ORCID ProfileMichelle Maxwell, View ORCID ProfileMedea McGraw, View ORCID ProfileChristina Alice Pom, View ORCID ProfileAugustin Ruiz, View ORCID ProfileJasmine Bomben, View ORCID ProfileDavid Feng, View ORCID ProfileNika Hejazinia, Shu Shi, View ORCID ProfileAaron Szafer, View ORCID ProfileWayne Wakeman, John Phillips, View ORCID ProfileAmy Bernard, Luke Esposito, Florence D D’Orazi, View ORCID ProfileSusan Sunkin, View ORCID ProfileKimberly Smith, View ORCID ProfileBosiljka Tasic, View ORCID ProfileAnton Arkhipov, View ORCID ProfileStaci Sorensen, View ORCID ProfileEd Lein, View ORCID ProfileChristof Koch, View ORCID ProfileGabe Murphy, View ORCID ProfileHongkui Zeng, View ORCID ProfileTim Jarsky
doi: https://doi.org/10.1101/2021.03.31.437553
Luke Campagnola
1Allen Institute for Brain Science, Seattle, WA, USA
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Stephanie C Seeman
1Allen Institute for Brain Science, Seattle, WA, USA
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Thomas Chartrand
1Allen Institute for Brain Science, Seattle, WA, USA
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Lisa Kim
1Allen Institute for Brain Science, Seattle, WA, USA
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Alex Hoggarth
1Allen Institute for Brain Science, Seattle, WA, USA
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Clare Gamlin
1Allen Institute for Brain Science, Seattle, WA, USA
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Shinya Ito
1Allen Institute for Brain Science, Seattle, WA, USA
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Jessica Trinh
1Allen Institute for Brain Science, Seattle, WA, USA
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Pasha Davoudian
1Allen Institute for Brain Science, Seattle, WA, USA
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Cristina Radaelli
1Allen Institute for Brain Science, Seattle, WA, USA
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Mean-Hwan Kim
1Allen Institute for Brain Science, Seattle, WA, USA
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Travis Hage
1Allen Institute for Brain Science, Seattle, WA, USA
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Thomas Braun
2Byte Physics (), Berlin, Germany
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Lauren Alfiler
1Allen Institute for Brain Science, Seattle, WA, USA
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Juia Andrade
1Allen Institute for Brain Science, Seattle, WA, USA
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Phillip Bohn
1Allen Institute for Brain Science, Seattle, WA, USA
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Rachel Dalley
1Allen Institute for Brain Science, Seattle, WA, USA
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Alex Henry
1Allen Institute for Brain Science, Seattle, WA, USA
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Sara Kebede
1Allen Institute for Brain Science, Seattle, WA, USA
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Alice Mukora
1Allen Institute for Brain Science, Seattle, WA, USA
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David Sandman
1Allen Institute for Brain Science, Seattle, WA, USA
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Grace Williams
1Allen Institute for Brain Science, Seattle, WA, USA
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Rachael Larsen
1Allen Institute for Brain Science, Seattle, WA, USA
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Corinne Teeter
1Allen Institute for Brain Science, Seattle, WA, USA
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Tanya L. Daigle
1Allen Institute for Brain Science, Seattle, WA, USA
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Kyla Berry
1Allen Institute for Brain Science, Seattle, WA, USA
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Nadia Dotson
1Allen Institute for Brain Science, Seattle, WA, USA
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Rachel Enstrom
1Allen Institute for Brain Science, Seattle, WA, USA
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Melissa Gorham
1Allen Institute for Brain Science, Seattle, WA, USA
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Madie Hupp
1Allen Institute for Brain Science, Seattle, WA, USA
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Samuel Dingman Lee
1Allen Institute for Brain Science, Seattle, WA, USA
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Kiet Ngo
1Allen Institute for Brain Science, Seattle, WA, USA
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Rusty Nicovich
1Allen Institute for Brain Science, Seattle, WA, USA
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Lydia Potekhina
1Allen Institute for Brain Science, Seattle, WA, USA
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Shea Ransford
1Allen Institute for Brain Science, Seattle, WA, USA
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Amanda Gary
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Jeff Goldy
1Allen Institute for Brain Science, Seattle, WA, USA
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Delissa McMillen
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Michael Tieu
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Miranda Walker
1Allen Institute for Brain Science, Seattle, WA, USA
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Colin Farrell
1Allen Institute for Brain Science, Seattle, WA, USA
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Martin Schroedter
1Allen Institute for Brain Science, Seattle, WA, USA
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Cliff Slaughterbeck
1Allen Institute for Brain Science, Seattle, WA, USA
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Charles Cobb
3The Ben and Catherine Ivy Center for Advanced Brain Tumor Treatment, Swedish Neuroscience Institute, Seattle, WA, USA
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Richard Ellenbogen
4Department of Neurological Surgery, University of Washington, Seattle, WA, USA
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Ryder P Gwinn
5Epilepsy Surgery and Functional Neurosurgery, Swedish Neuroscience Institute, Seattle, WA, USA
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C. Dirk Keene
6Department of Pathology, University of Washington, Seattle, WA, USA
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Andrew L Ko
4Department of Neurological Surgery, University of Washington, Seattle, WA, USA
7Regional Epilepsy Center at Harborview Medical Center, Seattle, WA, USA
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Jeffrey G Ojemann
4Department of Neurological Surgery, University of Washington, Seattle, WA, USA
7Regional Epilepsy Center at Harborview Medical Center, Seattle, WA, USA
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Daniel L Silbergeld
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Shu Shi
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Florence D D’Orazi
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Anton Arkhipov
1Allen Institute for Brain Science, Seattle, WA, USA
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Tim Jarsky
1Allen Institute for Brain Science, Seattle, WA, USA
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  • For correspondence: timj@alleninstitute.org
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Abstract

To elucidate cortical microcircuit structure and synaptic properties we present a unique, extensive, and public synaptic physiology dataset and analysis platform. Through its application, we reveal principles that relate cell type to synapse properties and intralaminar circuit organization in the mouse and human cortex. The dynamics of excitatory synapses align with the postsynaptic cell subclass, whereas inhibitory synapse dynamics partly align with presynaptic cell subclass but with considerable overlap. Despite these associations, synaptic properties are heterogeneous in most subclass to subclass connections. The two main axes of heterogeneity are strength and variability. Cell subclasses divide along the variability axis, while the strength axis accounts for significant heterogeneity within the subclass. In human cortex, excitatory to excitatory synapse dynamics are distinct from those in mouse and short-term plasticity varies with depth across layers 2 and 3. With a novel connectivity analysis that enables fair comparisons between circuit elements, we find that intralaminar connection probability among cell subclasses exhibits a strong layer dependence.These and other findings combined with the analysis platform create new opportunities for the neuroscience community to advance our understanding of cortical microcircuits.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • major text revision and connectivity modeling update

  • https://portal.brain-map.org/explore/connectivity/synaptic-physiology

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Local Connectivity and Synaptic Dynamics in Mouse and Human Neocortex
Luke Campagnola, Stephanie C Seeman, Thomas Chartrand, Lisa Kim, Alex Hoggarth, Clare Gamlin, Shinya Ito, Jessica Trinh, Pasha Davoudian, Cristina Radaelli, Mean-Hwan Kim, Travis Hage, Thomas Braun, Lauren Alfiler, Juia Andrade, Phillip Bohn, Rachel Dalley, Alex Henry, Sara Kebede, Alice Mukora, David Sandman, Grace Williams, Rachael Larsen, Corinne Teeter, Tanya L. Daigle, Kyla Berry, Nadia Dotson, Rachel Enstrom, Melissa Gorham, Madie Hupp, Samuel Dingman Lee, Kiet Ngo, Rusty Nicovich, Lydia Potekhina, Shea Ransford, Amanda Gary, Jeff Goldy, Delissa McMillen, Trangthanh Pham, Michael Tieu, La’Akea Siverts, Miranda Walker, Colin Farrell, Martin Schroedter, Cliff Slaughterbeck, Charles Cobb, Richard Ellenbogen, Ryder P Gwinn, C. Dirk Keene, Andrew L Ko, Jeffrey G Ojemann, Daniel L Silbergeld, Daniel Carey, Tamara Casper, Kirsten Crichton, Michael Clark, Nick Dee, Lauren Ellingwood, Jessica Gloe, Matthew Kroll, Josef Sulc, Herman Tung, Katherine Wadhwani, Krissy Brouner, Tom Egdorf, Michelle Maxwell, Medea McGraw, Christina Alice Pom, Augustin Ruiz, Jasmine Bomben, David Feng, Nika Hejazinia, Shu Shi, Aaron Szafer, Wayne Wakeman, John Phillips, Amy Bernard, Luke Esposito, Florence D D’Orazi, Susan Sunkin, Kimberly Smith, Bosiljka Tasic, Anton Arkhipov, Staci Sorensen, Ed Lein, Christof Koch, Gabe Murphy, Hongkui Zeng, Tim Jarsky
bioRxiv 2021.03.31.437553; doi: https://doi.org/10.1101/2021.03.31.437553
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Local Connectivity and Synaptic Dynamics in Mouse and Human Neocortex
Luke Campagnola, Stephanie C Seeman, Thomas Chartrand, Lisa Kim, Alex Hoggarth, Clare Gamlin, Shinya Ito, Jessica Trinh, Pasha Davoudian, Cristina Radaelli, Mean-Hwan Kim, Travis Hage, Thomas Braun, Lauren Alfiler, Juia Andrade, Phillip Bohn, Rachel Dalley, Alex Henry, Sara Kebede, Alice Mukora, David Sandman, Grace Williams, Rachael Larsen, Corinne Teeter, Tanya L. Daigle, Kyla Berry, Nadia Dotson, Rachel Enstrom, Melissa Gorham, Madie Hupp, Samuel Dingman Lee, Kiet Ngo, Rusty Nicovich, Lydia Potekhina, Shea Ransford, Amanda Gary, Jeff Goldy, Delissa McMillen, Trangthanh Pham, Michael Tieu, La’Akea Siverts, Miranda Walker, Colin Farrell, Martin Schroedter, Cliff Slaughterbeck, Charles Cobb, Richard Ellenbogen, Ryder P Gwinn, C. Dirk Keene, Andrew L Ko, Jeffrey G Ojemann, Daniel L Silbergeld, Daniel Carey, Tamara Casper, Kirsten Crichton, Michael Clark, Nick Dee, Lauren Ellingwood, Jessica Gloe, Matthew Kroll, Josef Sulc, Herman Tung, Katherine Wadhwani, Krissy Brouner, Tom Egdorf, Michelle Maxwell, Medea McGraw, Christina Alice Pom, Augustin Ruiz, Jasmine Bomben, David Feng, Nika Hejazinia, Shu Shi, Aaron Szafer, Wayne Wakeman, John Phillips, Amy Bernard, Luke Esposito, Florence D D’Orazi, Susan Sunkin, Kimberly Smith, Bosiljka Tasic, Anton Arkhipov, Staci Sorensen, Ed Lein, Christof Koch, Gabe Murphy, Hongkui Zeng, Tim Jarsky
bioRxiv 2021.03.31.437553; doi: https://doi.org/10.1101/2021.03.31.437553

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