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The fluoride permeation pathway and anion recognition in Fluc family fluoride channels

Benjamin C. McIlwain, Roja Gundepudi, B. Ben Koff, Randy B. Stockbridge
doi: https://doi.org/10.1101/2021.04.03.438337
Benjamin C. McIlwain
1Department of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, USA
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Roja Gundepudi
2Program in Biophysics, University of Michigan, Ann Arbor, MI 48109, USA
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B. Ben Koff
1Department of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, USA
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Randy B. Stockbridge
1Department of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, USA
2Program in Biophysics, University of Michigan, Ann Arbor, MI 48109, USA
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  • For correspondence: stockbr@umich.edu
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Abstract

Fluc family fluoride channels protect microbes against ambient environmental fluoride by undermining the cytoplasmic accumulation of this toxic halide. These proteins are structurally idiosyncratic, and thus the permeation pathway and mechanism have no analogy in other known ion channels. Although fluoride binding sites were identified in previous structural studies, it was not evident how these ions access aqueous solution, and the molecular determinants of anion recognition and selectivity have not been elucidated. Using x-ray crystallography, planar bilayer electrophysiology and liposome-based assays, we identify additional binding sites along the permeation pathway. We use this information to develop an oriented system for planar lipid bilayer electrophysiology and observe anion block at one of these sites, revealing insights into the mechanism of anion recognition. We propose a permeation mechanism involving alternating occupancy of anion binding sites that are fully assembled only as the substrate approaches.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted April 04, 2021.
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The fluoride permeation pathway and anion recognition in Fluc family fluoride channels
Benjamin C. McIlwain, Roja Gundepudi, B. Ben Koff, Randy B. Stockbridge
bioRxiv 2021.04.03.438337; doi: https://doi.org/10.1101/2021.04.03.438337
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The fluoride permeation pathway and anion recognition in Fluc family fluoride channels
Benjamin C. McIlwain, Roja Gundepudi, B. Ben Koff, Randy B. Stockbridge
bioRxiv 2021.04.03.438337; doi: https://doi.org/10.1101/2021.04.03.438337

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