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Identifying SARS-CoV-2 Antiviral Compounds by Screening for Small Molecule Inhibitors of Nsp13 Helicase

View ORCID ProfileJingkun Zeng, View ORCID ProfileFlorian Weissmann, View ORCID ProfileAgustina P. Bertolin, View ORCID ProfileViktor Posse, View ORCID ProfileBerta Canal, View ORCID ProfileRachel Ulferts, View ORCID ProfileMary Wu, Ruth Harvey, View ORCID ProfileSaira Hussain, View ORCID ProfileJennifer C. Milligan, View ORCID ProfileChloe Roustan, View ORCID ProfileAnnabel Borg, View ORCID ProfileLaura McCoy, View ORCID ProfileLucy S. Drury, View ORCID ProfileSvend Kjaer, View ORCID ProfileJohn McCauley, View ORCID ProfileMichael Howell, View ORCID ProfileRupert Beale, View ORCID ProfileJohn F.X Diffley
doi: https://doi.org/10.1101/2021.04.07.438808
Jingkun Zeng
1Chromosome Replication Laboratory, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT
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  • ORCID record for Jingkun Zeng
Florian Weissmann
1Chromosome Replication Laboratory, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT
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  • ORCID record for Florian Weissmann
Agustina P. Bertolin
1Chromosome Replication Laboratory, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT
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  • ORCID record for Agustina P. Bertolin
Viktor Posse
1Chromosome Replication Laboratory, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT
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  • ORCID record for Viktor Posse
Berta Canal
1Chromosome Replication Laboratory, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT
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  • ORCID record for Berta Canal
Rachel Ulferts
2Cell Biology of Infection Laboratory, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT
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  • ORCID record for Rachel Ulferts
Mary Wu
3High Throughput Screening, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT
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  • ORCID record for Mary Wu
Ruth Harvey
4World Influenza Centre, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT
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Saira Hussain
4World Influenza Centre, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT
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  • ORCID record for Saira Hussain
Jennifer C. Milligan
1Chromosome Replication Laboratory, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT
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Chloe Roustan
5Structural Biology, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT
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  • ORCID record for Chloe Roustan
Annabel Borg
5Structural Biology, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT
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  • ORCID record for Annabel Borg
Laura McCoy
6Division of Infection and Immunity, University College London, WC1E 6BT
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  • ORCID record for Laura McCoy
Lucy S. Drury
1Chromosome Replication Laboratory, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT
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  • ORCID record for Lucy S. Drury
Svend Kjaer
5Structural Biology, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT
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  • ORCID record for Svend Kjaer
John McCauley
4World Influenza Centre, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT
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  • ORCID record for John McCauley
Michael Howell
3High Throughput Screening, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT
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  • ORCID record for Michael Howell
Rupert Beale
2Cell Biology of Infection Laboratory, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT
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  • ORCID record for Rupert Beale
John F.X Diffley
1Chromosome Replication Laboratory, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT
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  • ORCID record for John F.X Diffley
  • For correspondence: john.diffley@crick.ac.uk
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Summary

The coronavirus disease 2019 (COVID-19) pandemic, which is caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is a global public health challenge. While the efficacy of vaccines against emerging and future virus variants remains unclear, there is a need for therapeutics. Repurposing existing drugs represents a promising and potentially rapid opportunity to find novel antivirals against SARS-CoV-2. The virus encodes at least nine enzymatic activities that are potential drug targets. Here we have expressed, purified and developed enzymatic assays for SARS-CoV-2 nsp13 helicase, a viral replication protein that is essential for the coronavirus life cycle. We screened a custom chemical library of over 5000 previously characterised pharmaceuticals for nsp13 inhibitors using a FRET-based high-throughput screening (HTS) approach. From this, we have identified FPA-124 and several suramin-related compounds as novel inhibitors of nsp13 helicase activity in vitro. We describe the efficacy of these drugs using assays we developed to monitor SARS-CoV-2 growth in Vero E6 cells.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted April 08, 2021.
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Identifying SARS-CoV-2 Antiviral Compounds by Screening for Small Molecule Inhibitors of Nsp13 Helicase
Jingkun Zeng, Florian Weissmann, Agustina P. Bertolin, Viktor Posse, Berta Canal, Rachel Ulferts, Mary Wu, Ruth Harvey, Saira Hussain, Jennifer C. Milligan, Chloe Roustan, Annabel Borg, Laura McCoy, Lucy S. Drury, Svend Kjaer, John McCauley, Michael Howell, Rupert Beale, John F.X Diffley
bioRxiv 2021.04.07.438808; doi: https://doi.org/10.1101/2021.04.07.438808
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Identifying SARS-CoV-2 Antiviral Compounds by Screening for Small Molecule Inhibitors of Nsp13 Helicase
Jingkun Zeng, Florian Weissmann, Agustina P. Bertolin, Viktor Posse, Berta Canal, Rachel Ulferts, Mary Wu, Ruth Harvey, Saira Hussain, Jennifer C. Milligan, Chloe Roustan, Annabel Borg, Laura McCoy, Lucy S. Drury, Svend Kjaer, John McCauley, Michael Howell, Rupert Beale, John F.X Diffley
bioRxiv 2021.04.07.438808; doi: https://doi.org/10.1101/2021.04.07.438808

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