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Single-cell transcriptomics of peripheral blood in the aging mouse

Yee Voan Teo, View ORCID ProfileAshley Webb, View ORCID ProfileNicola Neretti
doi: https://doi.org/10.1101/2021.04.08.439040
Yee Voan Teo
1Department of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, Rhode Island, USA
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Ashley Webb
1Department of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, Rhode Island, USA
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Nicola Neretti
1Department of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, Rhode Island, USA
2Center for Computational Molecular Biology, Brown University, Providence, Rhode Island, USA
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  • For correspondence: nicola_neretti@brown.edu
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Abstract

Compositional and transcriptional changes in the hematopoietic system have been used as biomarkers of immunosenescence and aging. Here, we use single-cell RNA-sequencing to study the aging peripheral blood in mice, and characterize the changes in cell-type composition and transcriptional profiles associated with age. We identified 17 clusters from a total of 14,588 single cells. We detected a general upregulation of antigen processing and presentation and chemokine signaling pathways and a downregulation of genes involved in ribosome pathways with age. We also observed increased percentage of cells expressing markers of senescence, Cdkn1a and Cdkn2a, in old peripheral blood. In addition, we detected a cluster of activated T cells that are exclusively found in old blood, with lower expression of Cd28 and higher expression of Bcl2 and Cdkn2a, suggesting that the cells are senescent and resistant to apoptosis.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted April 10, 2021.
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Single-cell transcriptomics of peripheral blood in the aging mouse
Yee Voan Teo, Ashley Webb, Nicola Neretti
bioRxiv 2021.04.08.439040; doi: https://doi.org/10.1101/2021.04.08.439040
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Single-cell transcriptomics of peripheral blood in the aging mouse
Yee Voan Teo, Ashley Webb, Nicola Neretti
bioRxiv 2021.04.08.439040; doi: https://doi.org/10.1101/2021.04.08.439040

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