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A fast Myh super enhancer dictates adult muscle fiber phenotype through competitive interactions with the fast Myh genes

View ORCID ProfileMatthieu Dos Santos, Stéphanie Backer, Frédéric Auradé, Matthew Wong, Maud Wurmser, Rémi Pierre, Francina Langa, Marcio Do Cruzeiro, Alain Schmitt, Jean-Paul Concordet, Athanassia Sotiropoulos, Jeffrey Dilworth, Daan Noordermeer, Frédéric Relaix, Iori Sakakibara, Pascal Maire
doi: https://doi.org/10.1101/2021.04.17.438406
Matthieu Dos Santos
1Université de Paris, Institut Cochin, INSERM, CNRS. 75014 Paris, France
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  • ORCID record for Matthieu Dos Santos
Stéphanie Backer
1Université de Paris, Institut Cochin, INSERM, CNRS. 75014 Paris, France
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Frédéric Auradé
2Univ Paris Est Creteil, INSERM, EnvA, EFS, AP-HP, IMRB, 94010 Creteil, France
3Sorbonne Université, INSERM U974, Center for Research in Myology, 75013 Paris, France
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Matthew Wong
4Regenerative Medicine Program. Ottawa Hospital Research Institute, Canada
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Maud Wurmser
1Université de Paris, Institut Cochin, INSERM, CNRS. 75014 Paris, France
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Rémi Pierre
1Université de Paris, Institut Cochin, INSERM, CNRS. 75014 Paris, France
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Francina Langa
5Institut Pasteur. Paris. France
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Marcio Do Cruzeiro
1Université de Paris, Institut Cochin, INSERM, CNRS. 75014 Paris, France
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Alain Schmitt
1Université de Paris, Institut Cochin, INSERM, CNRS. 75014 Paris, France
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Jean-Paul Concordet
6MNHN. Paris. France
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Athanassia Sotiropoulos
1Université de Paris, Institut Cochin, INSERM, CNRS. 75014 Paris, France
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Jeffrey Dilworth
4Regenerative Medicine Program. Ottawa Hospital Research Institute, Canada
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Daan Noordermeer
7Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), Gif-sur-Yvette, France
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Frédéric Relaix
2Univ Paris Est Creteil, INSERM, EnvA, EFS, AP-HP, IMRB, 94010 Creteil, France
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Iori Sakakibara
1Université de Paris, Institut Cochin, INSERM, CNRS. 75014 Paris, France
8Institute of Medical Nutrition, Tokushima University Graduate School, Tokushima 770- 8503, Japan
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  • For correspondence: pascal.maire@inserm.fr iori.f.sakakibara@gmail.com
Pascal Maire
1Université de Paris, Institut Cochin, INSERM, CNRS. 75014 Paris, France
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  • For correspondence: pascal.maire@inserm.fr iori.f.sakakibara@gmail.com
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Summary

The contractile properties of adult myofibers are shaped by their Myosin heavy chain (MYH) isoform content. We identify by snATAC-seq a 42kb super-enhancer (SE) at the locus regrouping the fast Myh (fMyh) genes. By 4C-seq we show that active fMyh promoters interact with the SE by DNA looping, leading to the activation of a single promoter per nucleus. A rainbow mouse transgenic model of the locus including the SE recapitulates the endogenous spatio-temporal expression of adult fMyh genes. In situ deletion of the SE by CRISPR/Cas9 editing demonstrates its major role in the control of associated fMyh genes, and deletion of two fMyh genes at the locus reveals an active competition of the promoters for the shared SE. Last, by disrupting the organization of fMyh, we uncover positional heterogeneity within limb skeletal muscles that may underlie selective muscle susceptibility to damage in certain myopathies.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted April 18, 2021.
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A fast Myh super enhancer dictates adult muscle fiber phenotype through competitive interactions with the fast Myh genes
Matthieu Dos Santos, Stéphanie Backer, Frédéric Auradé, Matthew Wong, Maud Wurmser, Rémi Pierre, Francina Langa, Marcio Do Cruzeiro, Alain Schmitt, Jean-Paul Concordet, Athanassia Sotiropoulos, Jeffrey Dilworth, Daan Noordermeer, Frédéric Relaix, Iori Sakakibara, Pascal Maire
bioRxiv 2021.04.17.438406; doi: https://doi.org/10.1101/2021.04.17.438406
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A fast Myh super enhancer dictates adult muscle fiber phenotype through competitive interactions with the fast Myh genes
Matthieu Dos Santos, Stéphanie Backer, Frédéric Auradé, Matthew Wong, Maud Wurmser, Rémi Pierre, Francina Langa, Marcio Do Cruzeiro, Alain Schmitt, Jean-Paul Concordet, Athanassia Sotiropoulos, Jeffrey Dilworth, Daan Noordermeer, Frédéric Relaix, Iori Sakakibara, Pascal Maire
bioRxiv 2021.04.17.438406; doi: https://doi.org/10.1101/2021.04.17.438406

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