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Multiple acyl-CoA dehydrogenase deficiency kills Mycobacterium tuberculosis in vitro and during infection

Tiago Beites, Robert S Jansen, Ruojun Wang, Adrian Jinich, Kyu Rhee, Dirk Schnappinger, Sabine Ehrt
doi: https://doi.org/10.1101/2021.04.19.440201
Tiago Beites
1Department of Microbiology and Immunology, Weill Cornell Medical College, New York, NY 10065 USA
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Robert S Jansen
2Division of Infectious Diseases, Department of Medicine, Weill Cornell Medical College, New York, NY, 10065, USA
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Ruojun Wang
1Department of Microbiology and Immunology, Weill Cornell Medical College, New York, NY 10065 USA
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Adrian Jinich
2Division of Infectious Diseases, Department of Medicine, Weill Cornell Medical College, New York, NY, 10065, USA
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Kyu Rhee
1Department of Microbiology and Immunology, Weill Cornell Medical College, New York, NY 10065 USA
2Division of Infectious Diseases, Department of Medicine, Weill Cornell Medical College, New York, NY, 10065, USA
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Dirk Schnappinger
1Department of Microbiology and Immunology, Weill Cornell Medical College, New York, NY 10065 USA
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Sabine Ehrt
1Department of Microbiology and Immunology, Weill Cornell Medical College, New York, NY 10065 USA
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  • For correspondence: sae2004@med.cornell.edu
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ABSTRACT

The human pathogen Mycobacterium tuberculosis (Mtb) devotes a significant fraction of its genome to fatty acid metabolism. Although Mtb depends on host fatty acids as a carbon source, fatty acid β-oxidation is mediated by genetically redundant enzymes, which has hampered the development of antitubercular drugs targeting this metabolic pathway. Here, we identify rv0338c, referred to as etfDMtb, to encode a membrane dehydrogenase essential for fatty acid β-oxidation in Mtb. An etfD deletion mutant (ΔetfD) was incapable of growing on fatty acids in vitro, with long-chain fatty acids being bactericidal, and failed to grow and survive in mice. The ΔetfD metabolome revealed a block in β-oxidation at the step catalyzed by acyl-CoA dehydrogenases (ACADs). In many organisms, including humans, ACADs are functionally dependent on an electron transfer flavoprotein (ETF) and cognate dehydrogenase. Immunoprecipitation identified EtfD in complex with FixA (EtfBMtb). FixA (EtfBMtb) and FixB (EtfAMtb) are homologous to the human ETF subunits. Our results demonstrate that EtfBAMtb constitutes Mtb’s ETF, while EtfDMtb, although not homologous to human EtfD, functions as the dehydrogenase. These findings identify Mtb’s fatty acid β-oxidation as a novel potential target for TB drug development.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted April 19, 2021.
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Multiple acyl-CoA dehydrogenase deficiency kills Mycobacterium tuberculosis in vitro and during infection
Tiago Beites, Robert S Jansen, Ruojun Wang, Adrian Jinich, Kyu Rhee, Dirk Schnappinger, Sabine Ehrt
bioRxiv 2021.04.19.440201; doi: https://doi.org/10.1101/2021.04.19.440201
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Multiple acyl-CoA dehydrogenase deficiency kills Mycobacterium tuberculosis in vitro and during infection
Tiago Beites, Robert S Jansen, Ruojun Wang, Adrian Jinich, Kyu Rhee, Dirk Schnappinger, Sabine Ehrt
bioRxiv 2021.04.19.440201; doi: https://doi.org/10.1101/2021.04.19.440201

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