Stitching and registering highly multiplexed whole slide images of tissues and tumors using ASHLAR

Jeremy L. Muhlich; Yu-An Chen; Clarence Yapp; Douglas Russell; Sandro Santagata; Peter K Sorger

doi:10.1101/2021.04.20.440625

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Stitching and registering highly multiplexed whole slide images of tissues and tumors using ASHLAR

View ORCID ProfileJeremy L. Muhlich, View ORCID ProfileYu-An Chen, View ORCID ProfileClarence Yapp, View ORCID ProfileDouglas Russell, View ORCID ProfileSandro Santagata, View ORCID ProfilePeter K Sorger

doi: https://doi.org/10.1101/2021.04.20.440625

Jeremy L. Muhlich

1Human Tumor Atlas Network, Harvard Medical School, Boston, MA 02115, USA

2Harvard Ludwig Cancer Center and Laboratory of Systems Pharmacology, Harvard Medical School, Boston, MA 02115, USA

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ORCID record for Jeremy L. Muhlich

Yu-An Chen

1Human Tumor Atlas Network, Harvard Medical School, Boston, MA 02115, USA

2Harvard Ludwig Cancer Center and Laboratory of Systems Pharmacology, Harvard Medical School, Boston, MA 02115, USA

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Clarence Yapp

1Human Tumor Atlas Network, Harvard Medical School, Boston, MA 02115, USA

2Harvard Ludwig Cancer Center and Laboratory of Systems Pharmacology, Harvard Medical School, Boston, MA 02115, USA

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Douglas Russell

1Human Tumor Atlas Network, Harvard Medical School, Boston, MA 02115, USA

2Harvard Ludwig Cancer Center and Laboratory of Systems Pharmacology, Harvard Medical School, Boston, MA 02115, USA

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ORCID record for Douglas Russell

Sandro Santagata

1Human Tumor Atlas Network, Harvard Medical School, Boston, MA 02115, USA

2Harvard Ludwig Cancer Center and Laboratory of Systems Pharmacology, Harvard Medical School, Boston, MA 02115, USA

4Department of Pathology, Brigham and Women’s Hospital, Harvard Medical School, Boston, MA 02115, USA

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Peter K Sorger

1Human Tumor Atlas Network, Harvard Medical School, Boston, MA 02115, USA

2Harvard Ludwig Cancer Center and Laboratory of Systems Pharmacology, Harvard Medical School, Boston, MA 02115, USA

3Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA

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ORCID record for Peter K Sorger
For correspondence: peter_sorger@hms.harvard.edu lsp-papers@hms.harvard.edu

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https://github.com/labsyspharm/ashlar
https://dx.doi.org/10.7303/syn25826362

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Posted April 25, 2022.

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Stitching and registering highly multiplexed whole slide images of tissues and tumors using ASHLAR

Jeremy L. Muhlich, Yu-An Chen, Clarence Yapp, Douglas Russell, Sandro Santagata, Peter K Sorger

bioRxiv 2021.04.20.440625; doi: https://doi.org/10.1101/2021.04.20.440625

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Stitching and registering highly multiplexed whole slide images of tissues and tumors using ASHLAR

Jeremy L. Muhlich, Yu-An Chen, Clarence Yapp, Douglas Russell, Sandro Santagata, Peter K Sorger

bioRxiv 2021.04.20.440625; doi: https://doi.org/10.1101/2021.04.20.440625

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