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tdLanYFP, a yellow, bright, photostable and pH insensitive fluorescent protein for live cell imaging and FRET-based sensing strategies

Yasmina Bousmah, View ORCID ProfileHana Valenta, View ORCID ProfileGiulia Bertolin, Utkarsh Singh, Valérie Nicolas, View ORCID ProfileHélène Pasquier, View ORCID ProfileMarc Tramier, Fabienne Merola, View ORCID ProfileMarie Erard
doi: https://doi.org/10.1101/2021.04.27.441613
Yasmina Bousmah
aUniversité Paris-Saclay, CNRS, Institut de Chimie Physique, 91405 Orsay, France
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Hana Valenta
aUniversité Paris-Saclay, CNRS, Institut de Chimie Physique, 91405 Orsay, France
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Giulia Bertolin
bUniv Rennes, CNRS, IGDR [(Institut de génétique et développement de Rennes)] – UMR 6290, 35000 Rennes, France
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Utkarsh Singh
aUniversité Paris-Saclay, CNRS, Institut de Chimie Physique, 91405 Orsay, France
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Valérie Nicolas
cMicroscopy Facility (MIPSIT), Ingénierie et Plateformes au Service de l’Innovation Thérapeutique – IPSIT – UMS – US31 – UMS3679 (IPSIT), Université Paris-Saclay, 92296 Châtenay-Malabry, France
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Hélène Pasquier
aUniversité Paris-Saclay, CNRS, Institut de Chimie Physique, 91405 Orsay, France
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Marc Tramier
bUniv Rennes, CNRS, IGDR [(Institut de génétique et développement de Rennes)] – UMR 6290, 35000 Rennes, France
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Fabienne Merola
aUniversité Paris-Saclay, CNRS, Institut de Chimie Physique, 91405 Orsay, France
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Marie Erard
aUniversité Paris-Saclay, CNRS, Institut de Chimie Physique, 91405 Orsay, France
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  • For correspondence: marie.erard@universite-paris-saclay.fr
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Abstract

Yellow fluorescent proteins (YFP) are widely used as optical reporters in Förster Resonance Energy Transfer (FRET) based biosensors. Although great improvements have been done, the sensitivity of the biosensors is still limited by the low photostability and the poor fluorescence performances of YFPs at acidic pHs. Here, we characterize the yellow fluorescent protein, tdLanYFP, derived from the tetrameric protein from the cephalochordate B. lanceolatum, LanYFP. With a quantum yield of 0.92 and an extinction coefficient of 133 000 mol−1.L.cm−1, it is, to our knowledge, the brightest dimeric fluorescent protein available. Contrasting with EYFP and its derivatives, tdLanYFP has a very high photostability in vitro and in live cells. As a consequence, tdLanYFP allows imaging of cellular structures with sub-diffraction resolution using STED nanoscopy and is compatible with the use of spectro-microscopies in single molecule regimes. Its very low pK1/2 of 3.9 makes tdLanYFP an excellent tag even at acidic pHs. Finally, we show that tdLanYFP is valuable FRET partner either as donor or acceptor in different biosensing modalities. Altogether, these assets make tdLanYFP a very attractive yellow fluorescent protein for long-term or single-molecule live cell imaging including FRET experiments at acidic pH.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Funding This work was supported by LabEx PALM Grant ANR-10-LABX-0039-PALM and by the IDEX Paris Saclay (IRS BioProbe). H.V. was supported by a PhD felloship form MESRI.

  • The authors declare that they have no conflicts of interest with the contents of this article.

  • Supporting Information Available The file entitled Bousmah_ACSSensors_SI is available free of charge. It contains all details for plasmids construction and for in vitro expression and characterization of the recombinant proteins as well as supplementary figures and tables.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted August 02, 2021.
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tdLanYFP, a yellow, bright, photostable and pH insensitive fluorescent protein for live cell imaging and FRET-based sensing strategies
Yasmina Bousmah, Hana Valenta, Giulia Bertolin, Utkarsh Singh, Valérie Nicolas, Hélène Pasquier, Marc Tramier, Fabienne Merola, Marie Erard
bioRxiv 2021.04.27.441613; doi: https://doi.org/10.1101/2021.04.27.441613
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tdLanYFP, a yellow, bright, photostable and pH insensitive fluorescent protein for live cell imaging and FRET-based sensing strategies
Yasmina Bousmah, Hana Valenta, Giulia Bertolin, Utkarsh Singh, Valérie Nicolas, Hélène Pasquier, Marc Tramier, Fabienne Merola, Marie Erard
bioRxiv 2021.04.27.441613; doi: https://doi.org/10.1101/2021.04.27.441613

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