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Bipartite binding and partial inhibition links DEPTOR and mTOR in a mutually antagonistic embrace

View ORCID ProfileMaren Heimhalt, Alex Berndt, Jane Wagstaff, Madhanagopal Anandapadamanaban, Olga Perisic, Sarah Maslen, View ORCID ProfileStephen McLaughlin, Conny Wing-Heng Yu, Glenn R. Masson, Andreas Boland, Xiaodan Ni, Keitaro Yamashita, Garib N. Murshudov, Mark Skehel, Stefan M. Freund, View ORCID ProfileRoger L. Williams
doi: https://doi.org/10.1101/2021.04.28.441853
Maren Heimhalt
1MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK
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Alex Berndt
1MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK
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Jane Wagstaff
1MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK
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Madhanagopal Anandapadamanaban
1MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK
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Olga Perisic
1MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK
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Sarah Maslen
1MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK
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Stephen McLaughlin
1MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK
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Conny Wing-Heng Yu
1MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK
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Glenn R. Masson
1MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK
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Andreas Boland
2Department of Molecular Biology, University of Geneva, 30 quai Ernest-Ansermet, Geneva, CH1211, Switzerland
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Xiaodan Ni
1MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK
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Keitaro Yamashita
1MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK
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Garib N. Murshudov
1MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK
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Mark Skehel
1MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK
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Stefan M. Freund
1MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK
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Roger L. Williams
1MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK
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  • For correspondence: [email protected]
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Abstract

mTORC1 is a kinase complex regulating cell growth, proliferation and survival. Because mis-regulation of DEPTOR, an endogenous mTORC1 inhibitor, is associated with some cancers, we reconstituted mTORC1 with DEPTOR to understand its function. We find that DEPTOR is a unique partial mTORC1 inhibitor that may have evolved to preserve feedback inhibition of PI3K. Counterintuitively, mTORC1 activated by RHEB or oncogenic mutation is much more potently inhibited by DEPTOR. Although DEPTOR partially inhibits mTORC1, mTORC1 prevents this inhibition by phosphorylating DEPTOR, a mutual antagonism that requires no exogenous factors. Structural analyses of the mTORC1/DEPTOR complex showed DEPTOR’s PDZ domain interacting with the mTOR FAT region, and the unstructured linker preceding the PDZ binding to the mTOR FRB domain. Here we show, in contrast to previous cellular studies, that both the PDZ and linker regions are essential for inhibition, and it is likely that interaction with the FRB is crucial to the unique partial inhibition.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted April 30, 2021.
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Bipartite binding and partial inhibition links DEPTOR and mTOR in a mutually antagonistic embrace
Maren Heimhalt, Alex Berndt, Jane Wagstaff, Madhanagopal Anandapadamanaban, Olga Perisic, Sarah Maslen, Stephen McLaughlin, Conny Wing-Heng Yu, Glenn R. Masson, Andreas Boland, Xiaodan Ni, Keitaro Yamashita, Garib N. Murshudov, Mark Skehel, Stefan M. Freund, Roger L. Williams
bioRxiv 2021.04.28.441853; doi: https://doi.org/10.1101/2021.04.28.441853
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Bipartite binding and partial inhibition links DEPTOR and mTOR in a mutually antagonistic embrace
Maren Heimhalt, Alex Berndt, Jane Wagstaff, Madhanagopal Anandapadamanaban, Olga Perisic, Sarah Maslen, Stephen McLaughlin, Conny Wing-Heng Yu, Glenn R. Masson, Andreas Boland, Xiaodan Ni, Keitaro Yamashita, Garib N. Murshudov, Mark Skehel, Stefan M. Freund, Roger L. Williams
bioRxiv 2021.04.28.441853; doi: https://doi.org/10.1101/2021.04.28.441853

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