Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

Graph neural networks and sequence embeddings enable the prediction and design of the cofactor specificity of Rossmann fold proteins

Kamil Kaminski, Jan Ludwiczak, Maciej Jasinski, Adriana Bukala, Rafal Madaj, Krzysztof Szczepaniak, View ORCID ProfileStanislaw Dunin-Horkawicz
doi: https://doi.org/10.1101/2021.05.05.440912
Kamil Kaminski
1Laboratory of Structural Bioinformatics, Centre of New Technologies, University of Warsaw, 02-097 Warsaw, Poland
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Jan Ludwiczak
1Laboratory of Structural Bioinformatics, Centre of New Technologies, University of Warsaw, 02-097 Warsaw, Poland
2Laboratory of Bioinformatics, Nencki Institute of Experimental Biology, Pasteura 3, 02-093 Warsaw, Poland
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Maciej Jasinski
1Laboratory of Structural Bioinformatics, Centre of New Technologies, University of Warsaw, 02-097 Warsaw, Poland
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Adriana Bukala
1Laboratory of Structural Bioinformatics, Centre of New Technologies, University of Warsaw, 02-097 Warsaw, Poland
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Rafal Madaj
3Centre of Molecular and Macromolecular Studies, Polish Academy of Sciences, Sienkiewicza 112, 90-363, Lodz, Poland
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Krzysztof Szczepaniak
1Laboratory of Structural Bioinformatics, Centre of New Technologies, University of Warsaw, 02-097 Warsaw, Poland
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Stanislaw Dunin-Horkawicz
1Laboratory of Structural Bioinformatics, Centre of New Technologies, University of Warsaw, 02-097 Warsaw, Poland
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Stanislaw Dunin-Horkawicz
  • For correspondence: s.dunin-horkawicz@cent.uw.edu.pl
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Supplementary material
  • Data/Code
  • Preview PDF
Loading
  • Supplemental Tables and Figures[supplements/440912_file08.pdf]
Back to top
PreviousNext
Posted May 06, 2021.
Download PDF

Supplementary Material

Data/Code
Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
Graph neural networks and sequence embeddings enable the prediction and design of the cofactor specificity of Rossmann fold proteins
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
Graph neural networks and sequence embeddings enable the prediction and design of the cofactor specificity of Rossmann fold proteins
Kamil Kaminski, Jan Ludwiczak, Maciej Jasinski, Adriana Bukala, Rafal Madaj, Krzysztof Szczepaniak, Stanislaw Dunin-Horkawicz
bioRxiv 2021.05.05.440912; doi: https://doi.org/10.1101/2021.05.05.440912
Reddit logo Twitter logo Facebook logo LinkedIn logo Mendeley logo
Citation Tools
Graph neural networks and sequence embeddings enable the prediction and design of the cofactor specificity of Rossmann fold proteins
Kamil Kaminski, Jan Ludwiczak, Maciej Jasinski, Adriana Bukala, Rafal Madaj, Krzysztof Szczepaniak, Stanislaw Dunin-Horkawicz
bioRxiv 2021.05.05.440912; doi: https://doi.org/10.1101/2021.05.05.440912

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Bioinformatics
Subject Areas
All Articles
  • Animal Behavior and Cognition (4394)
  • Biochemistry (9612)
  • Bioengineering (7109)
  • Bioinformatics (24911)
  • Biophysics (12641)
  • Cancer Biology (9977)
  • Cell Biology (14375)
  • Clinical Trials (138)
  • Developmental Biology (7966)
  • Ecology (12131)
  • Epidemiology (2067)
  • Evolutionary Biology (16006)
  • Genetics (10937)
  • Genomics (14761)
  • Immunology (9886)
  • Microbiology (23700)
  • Molecular Biology (9490)
  • Neuroscience (50958)
  • Paleontology (370)
  • Pathology (1544)
  • Pharmacology and Toxicology (2688)
  • Physiology (4030)
  • Plant Biology (8676)
  • Scientific Communication and Education (1512)
  • Synthetic Biology (2402)
  • Systems Biology (6446)
  • Zoology (1346)