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An intramolecular scrambling path controlled by a gatekeeper in Xkr8 phospholipid scramblase

View ORCID ProfileTakaharu Sakuragi, View ORCID ProfileRyuta Kanai, View ORCID ProfileAkihisa Tsutsumi, Hirotaka Narita, Eriko Onishi, Takuya Miyazaki, Takeshi Baba, Atsushi Nakagawa, View ORCID ProfileMasahide Kikkawa, View ORCID ProfileChikashi Toyoshima, View ORCID ProfileShigekazu Nagata
doi: https://doi.org/10.1101/2021.05.06.442885
Takaharu Sakuragi
1Laboratory of Biochemistry and Immunology, World Premier International Immunology Frontier Research Center, Osaka University, Suita, 565-0871 Osaka, Japan
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  • ORCID record for Takaharu Sakuragi
Ryuta Kanai
2Institute for Quantitative Biosciences, The University of Tokyo, 113-0032 Tokyo, Japan
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  • ORCID record for Ryuta Kanai
Akihisa Tsutsumi
3Department of Cell Biology and Anatomy, Graduate School of Medicine, The University of Tokyo, Tokyo 113-0033, Japan
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Hirotaka Narita
4Institute for Protein Research, Osaka University, Suita, Osaka 565-0871 Japan
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Eriko Onishi
1Laboratory of Biochemistry and Immunology, World Premier International Immunology Frontier Research Center, Osaka University, Suita, 565-0871 Osaka, Japan
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Takuya Miyazaki
5Research Division, Chugai, Pharmaceutical Co., Ltd., Kamakura, Kanagawa 247-8530, Japan
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Takeshi Baba
5Research Division, Chugai, Pharmaceutical Co., Ltd., Kamakura, Kanagawa 247-8530, Japan
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Atsushi Nakagawa
4Institute for Protein Research, Osaka University, Suita, Osaka 565-0871 Japan
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Masahide Kikkawa
3Department of Cell Biology and Anatomy, Graduate School of Medicine, The University of Tokyo, Tokyo 113-0033, Japan
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  • ORCID record for Masahide Kikkawa
Chikashi Toyoshima
2Institute for Quantitative Biosciences, The University of Tokyo, 113-0032 Tokyo, Japan
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  • ORCID record for Chikashi Toyoshima
Shigekazu Nagata
1Laboratory of Biochemistry and Immunology, World Premier International Immunology Frontier Research Center, Osaka University, Suita, 565-0871 Osaka, Japan
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  • ORCID record for Shigekazu Nagata
  • For correspondence: snagata@ifrec.osaka-u.ac.jp
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Abstract

Xkr8-Basigin is a phospholipid scramblase at plasma membranes that is activated by kinase or caspase. We investigated its structure at a resolution of 3.8Å. Its membrane-spanning region had a cuboid-like structure stabilized by salt bridges between hydrophilic residues in helices in the lipid layer. The molecule carried phosphatidylcholine in a cleft on the surface that may function as an entry site for phospholipids. Five charged residues placed from top to bottom inside the molecule were essential for providing a path for scrambling phospholipids. A tryptophan residue was present at the extracellular end of the pathway and its mutation made the Xkr8-Basigin complex constitutively active, indicating its function as a gatekeeper. The structure of Xkr8-Basigin provides novel insights into the molecular mechanisms underlying phospholipid scrambling.

Competing Interest Statement

The authors have declared no competing interest.

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Posted May 06, 2021.
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An intramolecular scrambling path controlled by a gatekeeper in Xkr8 phospholipid scramblase
Takaharu Sakuragi, Ryuta Kanai, Akihisa Tsutsumi, Hirotaka Narita, Eriko Onishi, Takuya Miyazaki, Takeshi Baba, Atsushi Nakagawa, Masahide Kikkawa, Chikashi Toyoshima, Shigekazu Nagata
bioRxiv 2021.05.06.442885; doi: https://doi.org/10.1101/2021.05.06.442885
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An intramolecular scrambling path controlled by a gatekeeper in Xkr8 phospholipid scramblase
Takaharu Sakuragi, Ryuta Kanai, Akihisa Tsutsumi, Hirotaka Narita, Eriko Onishi, Takuya Miyazaki, Takeshi Baba, Atsushi Nakagawa, Masahide Kikkawa, Chikashi Toyoshima, Shigekazu Nagata
bioRxiv 2021.05.06.442885; doi: https://doi.org/10.1101/2021.05.06.442885

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