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Short Association Fibre Tractography

View ORCID ProfileDmitri Shastin, Sila Genc, Greg D. Parker, Kristin Koller, Chantal M.W. Tax, John Evans, Khalid Hamandi, William P. Gray, Derek K. Jones, Maxime Chamberland
doi: https://doi.org/10.1101/2021.05.07.443084
Dmitri Shastin
aCardiff University Brain Research Imaging Centre (CUBRIC), Cardiff University, Cardiff, United Kingdom
bDepartment of Neurosurgery, University Hospital of Wales, Cardiff, United Kingdom
cBRAIN Biomedical Research Unit, Health & Care Research Wales, Cardiff, United Kingdom
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  • ORCID record for Dmitri Shastin
  • For correspondence: sastind@cardiff.ac.uk
Sila Genc
aCardiff University Brain Research Imaging Centre (CUBRIC), Cardiff University, Cardiff, United Kingdom
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Greg D. Parker
aCardiff University Brain Research Imaging Centre (CUBRIC), Cardiff University, Cardiff, United Kingdom
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Kristin Koller
aCardiff University Brain Research Imaging Centre (CUBRIC), Cardiff University, Cardiff, United Kingdom
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Chantal M.W. Tax
aCardiff University Brain Research Imaging Centre (CUBRIC), Cardiff University, Cardiff, United Kingdom
dImage Sciences Institute, University Medical Center Utrecht, Utrecht, Netherlands
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John Evans
aCardiff University Brain Research Imaging Centre (CUBRIC), Cardiff University, Cardiff, United Kingdom
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Khalid Hamandi
aCardiff University Brain Research Imaging Centre (CUBRIC), Cardiff University, Cardiff, United Kingdom
cBRAIN Biomedical Research Unit, Health & Care Research Wales, Cardiff, United Kingdom
eDepartment of Neurology, University Hospital of Wales, Cardiff, United Kingdom
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William P. Gray
aCardiff University Brain Research Imaging Centre (CUBRIC), Cardiff University, Cardiff, United Kingdom
bDepartment of Neurosurgery, University Hospital of Wales, Cardiff, United Kingdom
cBRAIN Biomedical Research Unit, Health & Care Research Wales, Cardiff, United Kingdom
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Derek K. Jones
aCardiff University Brain Research Imaging Centre (CUBRIC), Cardiff University, Cardiff, United Kingdom
cBRAIN Biomedical Research Unit, Health & Care Research Wales, Cardiff, United Kingdom
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Maxime Chamberland
aCardiff University Brain Research Imaging Centre (CUBRIC), Cardiff University, Cardiff, United Kingdom
fDonders Institute for Brain, Cognition and Behaviour, Radboud University, Nijmegen, Netherlands
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Abstract

Through advancing the existing and introducing novel methodological developments in streamlines tractography, this work proposes an approach that is meant to specifically interrogate an important yet relatively understudied population of the human white matter - the short association fibres. By marrying tractography with surface representation of the cortex, the framework: (1) ensures a greater cortical surface coverage through spreading streamline seeds more uniformly; (2) relies on precise filtering mechanics which are particularly important when dealing with small, morphologically complex structures; (3) allows to make use of surface-based registration for dataset comparisons which can be superior in the vicinity of the cortex. The indexation of surface vertices at each streamline end enables direct interfacing between streamlines and the cortical surface without dependence on the voxel grid. Short association fibre tractograms generated using recent test-retest data from our institution are carefully characterised and measures of consistency using streamline-, voxel-, surface- and network-wise comparisons calculated.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • https://osf.io/z3mkn/

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted May 09, 2021.
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Short Association Fibre Tractography
Dmitri Shastin, Sila Genc, Greg D. Parker, Kristin Koller, Chantal M.W. Tax, John Evans, Khalid Hamandi, William P. Gray, Derek K. Jones, Maxime Chamberland
bioRxiv 2021.05.07.443084; doi: https://doi.org/10.1101/2021.05.07.443084
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Short Association Fibre Tractography
Dmitri Shastin, Sila Genc, Greg D. Parker, Kristin Koller, Chantal M.W. Tax, John Evans, Khalid Hamandi, William P. Gray, Derek K. Jones, Maxime Chamberland
bioRxiv 2021.05.07.443084; doi: https://doi.org/10.1101/2021.05.07.443084

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