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Visual Field Analysis: a reliable method to score left- and right eye-use using automated tracking

View ORCID ProfileMathilde Josserand, View ORCID ProfileOrsola Rosa-Salva, View ORCID ProfileElisabetta Versace, View ORCID ProfileBastien S. Lemaire
doi: https://doi.org/10.1101/2021.05.08.443242
Mathilde Josserand
1Center for Mind/Brain Sciences, University of Trento, Corso Bettini 31, 38068 Rovereto (TN), Italy
2Laboratoire Dynamique Du Langage UMR 5596, Université Lumière Lyon 2, 14 avenue Berthelot, 69363 LYON CEDEX 07, FRANCE
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  • For correspondence: mathilde.josserand@univ-lyon2.fr bastien.lemaire@unitn.it
Orsola Rosa-Salva
1Center for Mind/Brain Sciences, University of Trento, Corso Bettini 31, 38068 Rovereto (TN), Italy
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Elisabetta Versace
3School of Biological and Chemical Sciences, Queen Mary University of London, United Kingdom
1Center for Mind/Brain Sciences, University of Trento, Corso Bettini 31, 38068 Rovereto (TN), Italy
4Alan Turing Institute, United Kingdom
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Bastien S. Lemaire
1Center for Mind/Brain Sciences, University of Trento, Corso Bettini 31, 38068 Rovereto (TN), Italy
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  • For correspondence: mathilde.josserand@univ-lyon2.fr bastien.lemaire@unitn.it
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Abstract

Brain and behavioural asymmetries have been documented in various taxa. Many of these asymmetries involve preferential left- and right-eye use. However, measuring eye use through manual frame-by-frame analyses from video recordings is laborious and may lead to biases. Recent progress in technology allowed the development of accurate tracking techniques for measuring animal behaviour. Amongst these techniques, DeepLabCut, a python-based tracking toolbox using transfer learning with deep neural networks, offers the possibility to track different body parts with unprecedented accuracy. Exploiting the potentialities of DeepLabCut, we developed ‘Visual Field Analysis’, an additional open-source application for extracting eye-use data. To our knowledge, this is the first application that can automatically quantify left-right preferences in eye use. Here we test the performance of our application in measuring preferential eye-use in young domestic chicks. The comparison with manual scoring methods revealed a perfect correlation in the measures of eye-use obtained by ‘Visual Field Analysis’. With our application, eye-use can be analysed reliably, objectively and at a fine scale in different experimental paradigms.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted May 10, 2021.
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Visual Field Analysis: a reliable method to score left- and right eye-use using automated tracking
Mathilde Josserand, Orsola Rosa-Salva, Elisabetta Versace, Bastien S. Lemaire
bioRxiv 2021.05.08.443242; doi: https://doi.org/10.1101/2021.05.08.443242
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Visual Field Analysis: a reliable method to score left- and right eye-use using automated tracking
Mathilde Josserand, Orsola Rosa-Salva, Elisabetta Versace, Bastien S. Lemaire
bioRxiv 2021.05.08.443242; doi: https://doi.org/10.1101/2021.05.08.443242

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