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A chemically-defined growth medium to support Lactobacillus – Acetobacter community analysis

Kevin Aumiller, Eric Stevens, Robert Scheffler, Zehra Tüzün Güvener, Emily Tung, Anna B. Grimaldo, Hans K. Carlson, Adam M. Deutschbauer, Michiko E. Taga, Maria L. Marco, View ORCID ProfileWilliam B. Ludington
doi: https://doi.org/10.1101/2021.05.12.443930
Kevin Aumiller
1Carnegie Institution of Washington, Department of Embryology, Baltimore, MD 21218
2Johns Hopkins University, Department of Biology, Baltimore, MD 21218
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Eric Stevens
3University of California, Davis, Microbiology Graduate Group, College of Biology
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Robert Scheffler
1Carnegie Institution of Washington, Department of Embryology, Baltimore, MD 21218
2Johns Hopkins University, Department of Biology, Baltimore, MD 21218
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Zehra Tüzün Güvener
4University of California, Berkeley, Molecular and Cell Biology Department, 94720
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Emily Tung
4University of California, Berkeley, Molecular and Cell Biology Department, 94720
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Anna B. Grimaldo
5University of California, Berkeley, Department of Plant and Microbiology, 94720
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Hans K. Carlson
6Lawrence Berkeley National Laboratory, Department of Environmental Genomics and Systems Biology, Berkeley, CA 94720
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Adam M. Deutschbauer
5University of California, Berkeley, Department of Plant and Microbiology, 94720
6Lawrence Berkeley National Laboratory, Department of Environmental Genomics and Systems Biology, Berkeley, CA 94720
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Michiko E. Taga
5University of California, Berkeley, Department of Plant and Microbiology, 94720
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Maria L. Marco
3University of California, Davis, Microbiology Graduate Group, College of Biology
7University of California, Davis, Department of Food Science and Technology, Davis, CA 95616
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William B. Ludington
1Carnegie Institution of Washington, Department of Embryology, Baltimore, MD 21218
2Johns Hopkins University, Department of Biology, Baltimore, MD 21218
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  • ORCID record for William B. Ludington
  • For correspondence: [email protected]
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ABSTRACT

Lactobacilli and acetobacters are commercially important bacteria that often form communities in natural fermentations, including food preparations, spoilage, and in the digestive tract of Drosophila melanogaster fruit flies. Communities of these bacteria are widespread and prolific, despite numerous strain-specific auxotrophies, suggesting they have evolved nutrient interdependencies that regulate their growths. The use of a chemically-defined medium (CDM) supporting the growth of both groups of bacteria would greatly facilitate identification of the precise metabolic interactions between these two groups of bacteria. While numerous such media have been developed that support specific strains of lactobacilli and acetobacters, there has not been a medium formulated to support both genera. We developed such a medium, based on a previous Lactobacillus CDM, by modifying the nutrient abundances to improve growth of both groups of bacteria. We further simplified the medium by substituting casamino acids for individual amino acids and the standard Wolfe’s vitamins and mineral stocks for individual vitamins and minerals, resulting in a reduction from 40 to 8 stock solutions. The new CDM and variations of it support robust growth of lactobacilli and acetobacters. We provide the composition and an example of its use to measure nutritional interactions.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted May 14, 2021.
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A chemically-defined growth medium to support Lactobacillus – Acetobacter community analysis
Kevin Aumiller, Eric Stevens, Robert Scheffler, Zehra Tüzün Güvener, Emily Tung, Anna B. Grimaldo, Hans K. Carlson, Adam M. Deutschbauer, Michiko E. Taga, Maria L. Marco, William B. Ludington
bioRxiv 2021.05.12.443930; doi: https://doi.org/10.1101/2021.05.12.443930
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A chemically-defined growth medium to support Lactobacillus – Acetobacter community analysis
Kevin Aumiller, Eric Stevens, Robert Scheffler, Zehra Tüzün Güvener, Emily Tung, Anna B. Grimaldo, Hans K. Carlson, Adam M. Deutschbauer, Michiko E. Taga, Maria L. Marco, William B. Ludington
bioRxiv 2021.05.12.443930; doi: https://doi.org/10.1101/2021.05.12.443930

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