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Mammary lineage dictates homologous recombination repair and PARP inhibitor vulnerability

View ORCID ProfileHyeyeon Kim, Alison E. Casey, Luis Palomero, Kazeera Aliar, View ORCID ProfileMathepan Mahendralingam, Michael Parsons, Swami Narala, Francesca Mateo, Stefan Hofer, Paul D. Waterhouse, View ORCID ProfileThomas Kislinger, Miquel A. Pujana, Hal K. Berman, View ORCID ProfileRama Khokha
doi: https://doi.org/10.1101/2021.05.14.444217
Hyeyeon Kim
1Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada
2Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada
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  • ORCID record for Hyeyeon Kim
Alison E. Casey
1Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada
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Luis Palomero
3ProCURE, Catalan Institute of Oncology, Oncobell, Bellvitge Institute for Biomedical Research (IDIBELL), L’Hospitalet del Llobregat, 08908, Barcelona, Catalonia, Spain
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Kazeera Aliar
1Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada
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Mathepan Mahendralingam
1Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada
2Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada
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Michael Parsons
4Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario, Canada
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Swami Narala
1Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada
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Francesca Mateo
3ProCURE, Catalan Institute of Oncology, Oncobell, Bellvitge Institute for Biomedical Research (IDIBELL), L’Hospitalet del Llobregat, 08908, Barcelona, Catalonia, Spain
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Stefan Hofer
1Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada
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Paul D. Waterhouse
2Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada
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Thomas Kislinger
1Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada
2Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada
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Miquel A. Pujana
3ProCURE, Catalan Institute of Oncology, Oncobell, Bellvitge Institute for Biomedical Research (IDIBELL), L’Hospitalet del Llobregat, 08908, Barcelona, Catalonia, Spain
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Hal K. Berman
1Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada
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Rama Khokha
1Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada
2Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada
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  • For correspondence: rama.khokha@utoronto.ca rama.khokha@uhnresearch.ca
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Abstract

It has long been assumed that all normal cells have the same capacity to engage homologous recombination (HR) and non-homologous end joining (NHEJ) to repair DNA double-strand breaks (DSBs), a concept exploited for DNA-damaging chemotherapeutics. We show that mammary epithelial lineage dictates the DSB repair pathway choice. Primary mammary proteomes and DSB repair enumeration by γ-H2AX, Rad51 and DNA-PKc foci reveal that NHEJ operates in all epithelial cells, but high-fidelity HR is restricted to the luminal lineage. This translates to divergent poly (ADP-ribose) polymerase inhibitor (PARPi) vulnerability of mammary epithelial progenitor activity in both mouse and human, irrespective of the BRCA1/2 status. Proteome-defined lineage-specific signatures correlate to breast cancer subtypes and predict PARPi response of triple-negative human breast cancer xenografts. These intrinsically divergent HR characteristics of mammary cell types underpin a new strategy for identifying PARPi responders.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted May 17, 2021.
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Mammary lineage dictates homologous recombination repair and PARP inhibitor vulnerability
Hyeyeon Kim, Alison E. Casey, Luis Palomero, Kazeera Aliar, Mathepan Mahendralingam, Michael Parsons, Swami Narala, Francesca Mateo, Stefan Hofer, Paul D. Waterhouse, Thomas Kislinger, Miquel A. Pujana, Hal K. Berman, Rama Khokha
bioRxiv 2021.05.14.444217; doi: https://doi.org/10.1101/2021.05.14.444217
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Mammary lineage dictates homologous recombination repair and PARP inhibitor vulnerability
Hyeyeon Kim, Alison E. Casey, Luis Palomero, Kazeera Aliar, Mathepan Mahendralingam, Michael Parsons, Swami Narala, Francesca Mateo, Stefan Hofer, Paul D. Waterhouse, Thomas Kislinger, Miquel A. Pujana, Hal K. Berman, Rama Khokha
bioRxiv 2021.05.14.444217; doi: https://doi.org/10.1101/2021.05.14.444217

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