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Development of a Low-Cost System for Simultaneous Longitudinal Biological Imaging

View ORCID ProfileVictoria T. Ly, View ORCID ProfilePierre V. Baudin, View ORCID ProfilePattawong Pansodtee, Erik A. Jung, View ORCID ProfileKateryna Voitiuk, View ORCID ProfileYohei M. Rosen, View ORCID ProfileHelen Rankin Willsey, View ORCID ProfileGary L. Mantalas, Spencer T. Seiler, View ORCID ProfileJohn A. Selberg, Sergio A. Cordero, Jayden M. Ross, View ORCID ProfileMarco Rolandi, View ORCID ProfileAlex A. Pollen, Tomasz J. Nowakowski, David Haussler, View ORCID ProfileMohammed A. Mostajo-Radji, View ORCID ProfileSofie R. Salama, View ORCID ProfileMircea Teodorescu
doi: https://doi.org/10.1101/2021.05.17.443454
Victoria T. Ly
1Department of Electrical and Computer Engineering, University of California Santa Cruz, Santa Cruz, CA 95060, USA
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  • For correspondence: vily@ucsc.edu mteodore@ucsc.edu
Pierre V. Baudin
1Department of Electrical and Computer Engineering, University of California Santa Cruz, Santa Cruz, CA 95060, USA
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Pattawong Pansodtee
1Department of Electrical and Computer Engineering, University of California Santa Cruz, Santa Cruz, CA 95060, USA
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Erik A. Jung
1Department of Electrical and Computer Engineering, University of California Santa Cruz, Santa Cruz, CA 95060, USA
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Kateryna Voitiuk
3Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95060, USA
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  • ORCID record for Kateryna Voitiuk
Yohei M. Rosen
3Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95060, USA
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Helen Rankin Willsey
2Department of Psychiatry and Behavioral Sciences, Weill Institute for Neurosciences, University of California San Francisco, San Francisco, CA 94143,USA
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Gary L. Mantalas
4Department of Molecular, Cell and Developmental Biology, University of California Santa Cruz, Santa Cruz, CA 95060, USA
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Spencer T. Seiler
3Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95060, USA
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John A. Selberg
1Department of Electrical and Computer Engineering, University of California Santa Cruz, Santa Cruz, CA 95060, USA
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Sergio A. Cordero
1Department of Electrical and Computer Engineering, University of California Santa Cruz, Santa Cruz, CA 95060, USA
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Jayden M. Ross
5The Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, University of California San Francisco, San Francisco, CA 94143, USA
6Department of Anatomy, University of California San Francisco, San Francisco, CA 94143, USA
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Marco Rolandi
1Department of Electrical and Computer Engineering, University of California Santa Cruz, Santa Cruz, CA 95060, USA
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Alex A. Pollen
5The Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, University of California San Francisco, San Francisco, CA 94143, USA
7Department of Neurology, University of California San Francisco, San Francisco, CA 94143, USA
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Tomasz J. Nowakowski
5The Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, University of California San Francisco, San Francisco, CA 94143, USA
6Department of Anatomy, University of California San Francisco, San Francisco, CA 94143, USA
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David Haussler
3Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95060, USA
8HHMI: Howard Hughes Medical Institute, University of California, Santa Cruz, Santa Cruz, CA, 95064
9UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA
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Mohammed A. Mostajo-Radji
5The Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, University of California San Francisco, San Francisco, CA 94143, USA
7Department of Neurology, University of California San Francisco, San Francisco, CA 94143, USA
9UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA
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Sofie R. Salama
3Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95060, USA
8HHMI: Howard Hughes Medical Institute, University of California, Santa Cruz, Santa Cruz, CA, 95064
9UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA
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Mircea Teodorescu
1Department of Electrical and Computer Engineering, University of California Santa Cruz, Santa Cruz, CA 95060, USA
9UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA
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  • For correspondence: vily@ucsc.edu mteodore@ucsc.edu
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ABSTRACT

Simultaneous longitudinal imaging across multiple conditions and replicates has been crucial for scientific studies aiming to understand biological processes and disease. Yet, imaging systems capable of accomplishing these tasks are economically unattainable for most academic and teaching laboratories around the world. Here we propose the Picroscope, which is the first low cost system for simultaneous longitudinal biological imaging made primarily using off-the-shelf and 3D-printed materials. The Picroscope is compatible with standard 24-well cell culture plates and captures 3D z-stack image data. The Picroscope can be controlled remotely, allowing for automatic imaging with minimal intervention from the investigator. Here we use this system in a range of applications. We gathered longitudinal whole organism image data for frogs, zebrafish and planaria worms. We also gathered image data inside an incubator to observe 2D monolayers and 3D mammalian tissue culture models. Using this tool, we can measure the behavior of entire organisms or individual cells over long time periods.

Competing Interest Statement

The authors have written patents covering the technology described in this article. AAP is in the board of Herophilus. The authors declare no other conflict of interest

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license.
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Posted May 20, 2021.
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Development of a Low-Cost System for Simultaneous Longitudinal Biological Imaging
Victoria T. Ly, Pierre V. Baudin, Pattawong Pansodtee, Erik A. Jung, Kateryna Voitiuk, Yohei M. Rosen, Helen Rankin Willsey, Gary L. Mantalas, Spencer T. Seiler, John A. Selberg, Sergio A. Cordero, Jayden M. Ross, Marco Rolandi, Alex A. Pollen, Tomasz J. Nowakowski, David Haussler, Mohammed A. Mostajo-Radji, Sofie R. Salama, Mircea Teodorescu
bioRxiv 2021.05.17.443454; doi: https://doi.org/10.1101/2021.05.17.443454
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Development of a Low-Cost System for Simultaneous Longitudinal Biological Imaging
Victoria T. Ly, Pierre V. Baudin, Pattawong Pansodtee, Erik A. Jung, Kateryna Voitiuk, Yohei M. Rosen, Helen Rankin Willsey, Gary L. Mantalas, Spencer T. Seiler, John A. Selberg, Sergio A. Cordero, Jayden M. Ross, Marco Rolandi, Alex A. Pollen, Tomasz J. Nowakowski, David Haussler, Mohammed A. Mostajo-Radji, Sofie R. Salama, Mircea Teodorescu
bioRxiv 2021.05.17.443454; doi: https://doi.org/10.1101/2021.05.17.443454

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