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Light-weight Electrophysiology Hardware and Software Platform for Cloud-Based Neural Recording Experiments

View ORCID ProfileKateryna Voituik, View ORCID ProfileJinghui Geng, View ORCID ProfileMatthew G. Keefe, David F. Parks, Sebastian E. Sanso, Nico Hawthorne, View ORCID ProfileDaniel B. Freeman, View ORCID ProfileTomasz J. Nowakowski, View ORCID ProfileSofie R. Salama, View ORCID ProfileMircea Teodorescu, View ORCID ProfileDavid Haussler
doi: https://doi.org/10.1101/2021.05.18.444685
Kateryna Voituik
1Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95060, USA
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  • ORCID record for Kateryna Voituik
Jinghui Geng
2Department of Electrical and Computer Engineering, University of California Santa Cruz, Santa Cruz, CA 95060, USA
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  • For correspondence: jgeng2@ucsc.edu
Matthew G. Keefe
3Department of Anatomy, University of California San Francisco, San Francisco, CA 94143, USA
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David F. Parks
1Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95060, USA
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Sebastian E. Sanso
7UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA
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Nico Hawthorne
2Department of Electrical and Computer Engineering, University of California Santa Cruz, Santa Cruz, CA 95060, USA
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Daniel B. Freeman
4Universal Audio Inc., Scotts Valley, CA, 95066, USA
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Tomasz J. Nowakowski
3Department of Anatomy, University of California San Francisco, San Francisco, CA 94143, USA
5The Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, University of California San Francisco, San Francisco, CA 94143, USA
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Sofie R. Salama
1Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95060, USA
6Howard Hughes Medical Institute, University of California, Santa Cruz, Santa Cruz, CA, 95064
7UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA
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Mircea Teodorescu
2Department of Electrical and Computer Engineering, University of California Santa Cruz, Santa Cruz, CA 95060, USA
7UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA
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David Haussler
1Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95060, USA
6Howard Hughes Medical Institute, University of California, Santa Cruz, Santa Cruz, CA, 95064
7UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA
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Abstract

Objective Neural activity represents a functional readout of neurons that is increasingly important to monitor in a wide range of experiments. Extracellular recordings have emerged as a powerful technique for measuring neural activity because these methods do not lead to the destruction or degradation of the cells being measured. Current approaches to electrophysiology have a low throughput of experiments due to manual supervision and expensive equipment. This bottleneck limits broader inferences that can be achieved with numerous long-term recorded samples.

Approach We developed Piphys, an inexpensive open source neurophysiological recording platform that consists both hardware and software. It is easily accessed and controlled via a standard web interface through Internet of Things (IoT) protocols.

Main Results We used a Raspberry Pi as the primary processing device and Intan bioamplifier. We designed a hardware expansion circuit board and software to enable voltage sampling and user interaction. This standalone system was validated with primary human neurons, showing reliability in collecting real-time neural activity.

Significance The hardware modules and cloud software allow for remote control of neural recording experiments as well as horizontal scalability, enabling long-term observations of development, organization, and neural activity at scale.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted May 20, 2021.
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Light-weight Electrophysiology Hardware and Software Platform for Cloud-Based Neural Recording Experiments
Kateryna Voituik, Jinghui Geng, Matthew G. Keefe, David F. Parks, Sebastian E. Sanso, Nico Hawthorne, Daniel B. Freeman, Tomasz J. Nowakowski, Sofie R. Salama, Mircea Teodorescu, David Haussler
bioRxiv 2021.05.18.444685; doi: https://doi.org/10.1101/2021.05.18.444685
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Light-weight Electrophysiology Hardware and Software Platform for Cloud-Based Neural Recording Experiments
Kateryna Voituik, Jinghui Geng, Matthew G. Keefe, David F. Parks, Sebastian E. Sanso, Nico Hawthorne, Daniel B. Freeman, Tomasz J. Nowakowski, Sofie R. Salama, Mircea Teodorescu, David Haussler
bioRxiv 2021.05.18.444685; doi: https://doi.org/10.1101/2021.05.18.444685

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