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Quantitative Tyr Phosphoproteomic Analyses Identify Cholesterol as a Master Regulator of the Tumor Adaptive Resistance to MAPK Inhibition

View ORCID ProfileXu-Dong Wang, View ORCID ProfileChiho Kim, Yajie Zhang, Smita Rindhe, View ORCID ProfileMelanie H. Cobb, View ORCID ProfileYonghao Yu
doi: https://doi.org/10.1101/2021.05.20.444617
Xu-Dong Wang
1Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, 75390, TX, USA
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  • ORCID record for Xu-Dong Wang
Chiho Kim
1Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, 75390, TX, USA
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Yajie Zhang
1Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, 75390, TX, USA
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Smita Rindhe
1Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, 75390, TX, USA
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Melanie H. Cobb
2Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, 75390, TX, USA; Department of Pharmacology, University of Texas Southwestern Medical Center, Dallas, 75390, TX, USA
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Yonghao Yu
1Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, 75390, TX, USA
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  • For correspondence: Yonghao.Yu@UTsouthwestern.edu
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Abstract

Although targeted inhibition of the MAPK pathway has achieved remarkable patient responses in many cancers with MAPK hyperactivation, the development of resistance has remained a critical challenge. Besides genomic resistance mechanisms, adaptive tumor response also underlies the resistance to targeted MAPK inhibitors. It is being increasingly appreciated that such bypass mechanisms often lead to the activation of many pro-survival kinases, which complicates the rational design of combination therapies. Here we performed global tyrosine phosphoproteomic (pTyr) analyses and demonstrated that targeted inhibition of MAPK signaling in melanoma cells leads to a profound remodeling of the pTyr proteome. Intriguingly, many of these kinases contain a cholesterol binding motif, suggesting that altered cholesterol metabolism might drive, in a coordinated fashion, the activation of these kinases. Indeed, we found a dramatic accumulation of intracellular cholesterol in melanoma cells (with BRAFV600E mutations) and non-small cell lung cancer cells (with KRASG12C mutations) treated with MAPK and KRASG12C inhibitors, respectively. Importantly, depletion of cholesterol not only prevented the MAPK inhibition-induced feedback activation of pTyr singling but also enhanced the cytotoxic effects of MAPK inhibitors, both in vitro and in vivo. Taken together, our findings provide the evidence suggesting that cholesterol functions as a master regulator of the tumor adaptive response to targeted MAPK inhibitors. These results also suggest that MAPK inhibitors could be combined with cholesterol-lowering agents to achieve a more complete and durable response in tumors with hyperactive MAPK signaling.

Competing Interest Statement

Y.Y. has received research funding from Pfizer.

Footnotes

  • http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD021877

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Quantitative Tyr Phosphoproteomic Analyses Identify Cholesterol as a Master Regulator of the Tumor Adaptive Resistance to MAPK Inhibition
Xu-Dong Wang, Chiho Kim, Yajie Zhang, Smita Rindhe, Melanie H. Cobb, Yonghao Yu
bioRxiv 2021.05.20.444617; doi: https://doi.org/10.1101/2021.05.20.444617
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Quantitative Tyr Phosphoproteomic Analyses Identify Cholesterol as a Master Regulator of the Tumor Adaptive Resistance to MAPK Inhibition
Xu-Dong Wang, Chiho Kim, Yajie Zhang, Smita Rindhe, Melanie H. Cobb, Yonghao Yu
bioRxiv 2021.05.20.444617; doi: https://doi.org/10.1101/2021.05.20.444617

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