New Results
ASLPrep: A Generalizable Platform for Processing of Arterial Spin Labeled MRI and Quantification of Regional Brain Perfusion
View ORCID ProfileAzeez Adebimpe, Maxwell Bertolero, Sudipto Dolui, Matthew Cieslak, Kristin Murtha, Erica B. Baller, Bradley Boeve, Adam Boxer, Ellyn R. Butler, Phil Cook, Stan Colcombe, Sydney Covitz, Christos Davatzikos, Diego G. Davila, Mark A. Elliott, Matthew W. Flounders, Alexandre R. Franco, Raquel E. Gur, Ruben C. Gur, Basma Jaber, Corey McMillian, the ALLFTD Consortium, Michael Milham, Henk J.M.M. Mutsaerts, Desmond J. Oathe, Christopher A. Olm, Jeffrey S. Phillips, Will Tackett, David R. Roalf, Howard Rosen, Tinashe M. Tapera, M. Dylan Tisdall, Oscar Esteban, Russell A. Poldrack, John A. Detre, Theodore D. Satterthwaite
doi: https://doi.org/10.1101/2021.05.20.444998
Azeez Adebimpe
1Penn Lifespan Informatics and Neuroimaging Center, Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
2Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
Maxwell Bertolero
1Penn Lifespan Informatics and Neuroimaging Center, Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
2Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
Sudipto Dolui
3Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
Matthew Cieslak
1Penn Lifespan Informatics and Neuroimaging Center, Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
2Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
Kristin Murtha
1Penn Lifespan Informatics and Neuroimaging Center, Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
2Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
Erica B. Baller
1Penn Lifespan Informatics and Neuroimaging Center, Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
2Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
Bradley Boeve
4Department of Neurology, Mayo Clinic, Rochester, MN, 55111, USA
Adam Boxer
5Department of Neurology, University of California, San Francisco, CA, 94143, USA
Ellyn R. Butler
2Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
Phil Cook
6Penn Image Computing and Science Lab, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
Stan Colcombe
7Child Mind Institute, 101 E 56th St, New York, NY 10022, USA
8Center for Brain Imaging and Neuromodulation, Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY 10962, USA
Sydney Covitz
1Penn Lifespan Informatics and Neuroimaging Center, Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
2Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
Christos Davatzikos
9Center for Biomedical Image Computing & Analytics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
Diego G. Davila
1Penn Lifespan Informatics and Neuroimaging Center, Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
2Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
Mark A. Elliott
3Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
Matthew W. Flounders
2Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
10Center for Neuromodulation in Depression and Stress, Perelman School of Medicine, University of Pennsylvania, Philadelphia
Alexandre R. Franco
7Child Mind Institute, 101 E 56th St, New York, NY 10022, USA
8Center for Brain Imaging and Neuromodulation, Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY 10962, USA
Raquel E. Gur
2Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
Ruben C. Gur
2Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
Basma Jaber
1Penn Lifespan Informatics and Neuroimaging Center, Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
2Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
Corey McMillian
11Frontotemporal Degeneration Center, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
4Department of Neurology, Mayo Clinic, Rochester, MN, 55111, USA
5Department of Neurology, University of California, San Francisco, CA, 94143, USA
11Frontotemporal Degeneration Center, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
Michael Milham
7Child Mind Institute, 101 E 56th St, New York, NY 10022, USA
8Center for Brain Imaging and Neuromodulation, Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY 10962, USA
Henk J.M.M. Mutsaerts
12Department of Radiology and Nuclear Medicine, Amsterdam University Medical Center, Amsterdam Neuroscience, Amsterdam, The Netherlands
Desmond J. Oathe
2Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
10Center for Neuromodulation in Depression and Stress, Perelman School of Medicine, University of Pennsylvania, Philadelphia
Christopher A. Olm
11Frontotemporal Degeneration Center, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
Jeffrey S. Phillips
11Frontotemporal Degeneration Center, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
Will Tackett
3Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
David R. Roalf
2Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
Howard Rosen
5Department of Neurology, University of California, San Francisco, CA, 94143, USA
Tinashe M. Tapera
1Penn Lifespan Informatics and Neuroimaging Center, Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
2Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
M. Dylan Tisdall
3Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
Oscar Esteban
13Department of Radiology, Lausanne University Hospital and University of Lausanne, Switzerland
Russell A. Poldrack
14Department of Psychology, Stanford University, Stanford, USA
John A. Detre
3Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
15Department of Neurology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
Theodore D. Satterthwaite
1Penn Lifespan Informatics and Neuroimaging Center, Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
2Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
ABSTRACT
Arterial spin labeled (ASL) magnetic resonance imaging (MRI) is the primary method for non-invasively measuring regional brain perfusion in humans. We introduce ASLPrep, a suite of software pipelines that ensure the reproducible and generalizable processing of ASL MRI data.
Competing Interest Statement
The authors have declared no competing interest.
Copyright
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
Posted May 22, 2021.
ASLPrep: A Generalizable Platform for Processing of Arterial Spin Labeled MRI and Quantification of Regional Brain Perfusion
Azeez Adebimpe, Maxwell Bertolero, Sudipto Dolui, Matthew Cieslak, Kristin Murtha, Erica B. Baller, Bradley Boeve, Adam Boxer, Ellyn R. Butler, Phil Cook, Stan Colcombe, Sydney Covitz, Christos Davatzikos, Diego G. Davila, Mark A. Elliott, Matthew W. Flounders, Alexandre R. Franco, Raquel E. Gur, Ruben C. Gur, Basma Jaber, Corey McMillian, the ALLFTD Consortium, Michael Milham, Henk J.M.M. Mutsaerts, Desmond J. Oathe, Christopher A. Olm, Jeffrey S. Phillips, Will Tackett, David R. Roalf, Howard Rosen, Tinashe M. Tapera, M. Dylan Tisdall, Oscar Esteban, Russell A. Poldrack, John A. Detre, Theodore D. Satterthwaite
bioRxiv 2021.05.20.444998; doi: https://doi.org/10.1101/2021.05.20.444998
ASLPrep: A Generalizable Platform for Processing of Arterial Spin Labeled MRI and Quantification of Regional Brain Perfusion
Azeez Adebimpe, Maxwell Bertolero, Sudipto Dolui, Matthew Cieslak, Kristin Murtha, Erica B. Baller, Bradley Boeve, Adam Boxer, Ellyn R. Butler, Phil Cook, Stan Colcombe, Sydney Covitz, Christos Davatzikos, Diego G. Davila, Mark A. Elliott, Matthew W. Flounders, Alexandre R. Franco, Raquel E. Gur, Ruben C. Gur, Basma Jaber, Corey McMillian, the ALLFTD Consortium, Michael Milham, Henk J.M.M. Mutsaerts, Desmond J. Oathe, Christopher A. Olm, Jeffrey S. Phillips, Will Tackett, David R. Roalf, Howard Rosen, Tinashe M. Tapera, M. Dylan Tisdall, Oscar Esteban, Russell A. Poldrack, John A. Detre, Theodore D. Satterthwaite
bioRxiv 2021.05.20.444998; doi: https://doi.org/10.1101/2021.05.20.444998
Subject Area
Subject Areas
- Biochemistry (11752)
- Bioengineering (8752)
- Bioinformatics (29200)
- Biophysics (14974)
- Cancer Biology (12096)
- Cell Biology (17411)
- Clinical Trials (138)
- Developmental Biology (9421)
- Ecology (14182)
- Epidemiology (2067)
- Evolutionary Biology (18308)
- Genetics (12245)
- Genomics (16803)
- Immunology (11869)
- Microbiology (28097)
- Molecular Biology (11594)
- Neuroscience (60969)
- Paleontology (451)
- Pathology (1871)
- Pharmacology and Toxicology (3238)
- Physiology (4959)
- Plant Biology (10427)
- Synthetic Biology (2886)
- Systems Biology (7340)
- Zoology (1651)