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Structural basis of the interaction between SETD2 methyltransferase and hnRNP L paralogs for governing co-transcriptional splicing

View ORCID ProfileSaikat Bhattacharya, Suman Wang, View ORCID ProfileDivya Reddy, Siyuan Shen, Ying Zhang, Ning Zhang, Hua Li, Michael P. Washburn, Laurence Florens, Yunyu Shi, Fudong Li, View ORCID ProfileJerry L. Workman
doi: https://doi.org/10.1101/2021.05.22.445248
Saikat Bhattacharya
1Stowers Institute for Medical Research, Kansas City, Missouri 64110, USA
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  • ORCID record for Saikat Bhattacharya
Suman Wang
2Hefei National Laboratory for Physical Sciences at Microscale, School of Life Sciences, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, Anhui 230026, China
3Ministry of Education Key Laboratory for Membraneless Organelles and Cellular Dynamics, University of Science and Technology of China, Hefei, China
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Divya Reddy
1Stowers Institute for Medical Research, Kansas City, Missouri 64110, USA
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Siyuan Shen
2Hefei National Laboratory for Physical Sciences at Microscale, School of Life Sciences, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, Anhui 230026, China
3Ministry of Education Key Laboratory for Membraneless Organelles and Cellular Dynamics, University of Science and Technology of China, Hefei, China
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Ying Zhang
1Stowers Institute for Medical Research, Kansas City, Missouri 64110, USA
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Ning Zhang
1Stowers Institute for Medical Research, Kansas City, Missouri 64110, USA
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Hua Li
1Stowers Institute for Medical Research, Kansas City, Missouri 64110, USA
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Michael P. Washburn
4Department of Cancer Biology, University of Kansas Medical Center, Kansas City, KS, 66160, USA
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Laurence Florens
1Stowers Institute for Medical Research, Kansas City, Missouri 64110, USA
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Yunyu Shi
2Hefei National Laboratory for Physical Sciences at Microscale, School of Life Sciences, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, Anhui 230026, China
3Ministry of Education Key Laboratory for Membraneless Organelles and Cellular Dynamics, University of Science and Technology of China, Hefei, China
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Fudong Li
2Hefei National Laboratory for Physical Sciences at Microscale, School of Life Sciences, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, Anhui 230026, China
3Ministry of Education Key Laboratory for Membraneless Organelles and Cellular Dynamics, University of Science and Technology of China, Hefei, China
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Jerry L. Workman
1Stowers Institute for Medical Research, Kansas City, Missouri 64110, USA
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  • For correspondence: jlw@stowers.org
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ABSTRACT

The RNA recognition motif (RRM) binds to nucleic acids as well as proteins. More than one such domain is found in the pre-mRNA processing hnRNP proteins. While the mode of RNA recognition by RRMs is known, the molecular basis of their protein interaction remains obscure. Here we describe the mode of interaction between hnRNP L and LL with the methyltransferase SETD2. We demonstrate that for the interaction to occur, a leucine pair within a highly conserved stretch of SETD2 insert their side chains in hydrophobic pockets formed by hnRNP L RRM2. Notably, the structure also highlights that RRM2 can form a ternary complex with SETD2 and RNA. Remarkably, mutating the leucine pair in SETD2 also results in its reduced interaction with other hnRNPs. Importantly, the similarity that the mode of SETD2-hnRNP L interaction shares with other related protein-protein interactions reveals a conserved design by which splicing regulators interact with one another.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • ↵# email: jlw{at}stowers.org, lifudong{at}ustc.edu.cn

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted May 23, 2021.
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Structural basis of the interaction between SETD2 methyltransferase and hnRNP L paralogs for governing co-transcriptional splicing
Saikat Bhattacharya, Suman Wang, Divya Reddy, Siyuan Shen, Ying Zhang, Ning Zhang, Hua Li, Michael P. Washburn, Laurence Florens, Yunyu Shi, Fudong Li, Jerry L. Workman
bioRxiv 2021.05.22.445248; doi: https://doi.org/10.1101/2021.05.22.445248
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Structural basis of the interaction between SETD2 methyltransferase and hnRNP L paralogs for governing co-transcriptional splicing
Saikat Bhattacharya, Suman Wang, Divya Reddy, Siyuan Shen, Ying Zhang, Ning Zhang, Hua Li, Michael P. Washburn, Laurence Florens, Yunyu Shi, Fudong Li, Jerry L. Workman
bioRxiv 2021.05.22.445248; doi: https://doi.org/10.1101/2021.05.22.445248

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