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Personalized chordoma organoids for drug discovery studies

View ORCID ProfileAhmad Al Shihabi, View ORCID ProfileArdalan Davarifar, Huyen Thi Lam Nguyen, Nasrin Tavanaie, View ORCID ProfileScott D. Nelson, Jane Yanagawa, Noah Federman, View ORCID ProfileNicholas Bernthal, Francis Hornicek, View ORCID ProfileAlice Soragni
doi: https://doi.org/10.1101/2021.05.27.446040
Ahmad Al Shihabi
1Department of Orthopaedic Surgery, David Geffen School of Medicine, University of California Los Angeles, CA
2Department of Pathology, David Geffen School of Medicine, University of California Los Angeles, CA
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Ardalan Davarifar
1Department of Orthopaedic Surgery, David Geffen School of Medicine, University of California Los Angeles, CA
3Division of Hematology-Oncology, David Geffen School of Medicine, University of California Los Angeles, CA
4Department of Human Genetics, University of California Los Angeles, CA
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Huyen Thi Lam Nguyen
1Department of Orthopaedic Surgery, David Geffen School of Medicine, University of California Los Angeles, CA
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Nasrin Tavanaie
1Department of Orthopaedic Surgery, David Geffen School of Medicine, University of California Los Angeles, CA
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Scott D. Nelson
2Department of Pathology, David Geffen School of Medicine, University of California Los Angeles, CA
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Jane Yanagawa
5Department of Surgery, Division of Thoracic Surgery, David Geffen School of Medicine, University of California Los Angeles, CA
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Noah Federman
1Department of Orthopaedic Surgery, David Geffen School of Medicine, University of California Los Angeles, CA
6Department of Pediatrics, David Geffen School of Medicine, University of California Los Angeles, CA
8Jonsson Comprehensive Cancer Center, University of California Los Angeles, CA
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Nicholas Bernthal
1Department of Orthopaedic Surgery, David Geffen School of Medicine, University of California Los Angeles, CA
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Francis Hornicek
1Department of Orthopaedic Surgery, David Geffen School of Medicine, University of California Los Angeles, CA
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Alice Soragni
1Department of Orthopaedic Surgery, David Geffen School of Medicine, University of California Los Angeles, CA
7Molecular Biology Institute, University of California Los Angeles, CA
8Jonsson Comprehensive Cancer Center, University of California Los Angeles, CA
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  • For correspondence: alices@mednet.ucla.edu
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Abstract

Chordomas are rare tumors of notochordal origin, most commonly arising in the sacrum or skull base. Primary treatment of chordoma is surgery, however complete resection is not always feasible due to their anatomic location, and recurrence rates remain high. Chordomas are considered insensitive to conventional chemotherapy, and their rarity complicates running timely and adequately powered trials to identify effective regimens. Therefore, there is a need for discovery of novel therapeutic approaches. Drug discovery efforts in chordoma have been mostly limited to cell line models. Patient-derived organoids can accelerate drug discovery studies and predict patient responses to therapy. In this proof-of-concept study, we successfully established organoids from seven chordoma tumor samples obtained from five patients presenting with tumors in different sites and stages of disease. The organoids recapitulated features of the original parent tumors and inter-as well as intra-patient heterogeneity. High-throughput screenings performed on the organoids highlighted targeted agents such as PI3K/mTOR, EGFR, and JAK2/STAT3 inhibitors among the most effective molecules. Pathway analysis underscored how the NF-kB and IGF-1R pathways are sensitive to perturbations and potential targets to pursue for combination therapy of chordoma.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted May 27, 2021.
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Personalized chordoma organoids for drug discovery studies
Ahmad Al Shihabi, Ardalan Davarifar, Huyen Thi Lam Nguyen, Nasrin Tavanaie, Scott D. Nelson, Jane Yanagawa, Noah Federman, Nicholas Bernthal, Francis Hornicek, Alice Soragni
bioRxiv 2021.05.27.446040; doi: https://doi.org/10.1101/2021.05.27.446040
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Personalized chordoma organoids for drug discovery studies
Ahmad Al Shihabi, Ardalan Davarifar, Huyen Thi Lam Nguyen, Nasrin Tavanaie, Scott D. Nelson, Jane Yanagawa, Noah Federman, Nicholas Bernthal, Francis Hornicek, Alice Soragni
bioRxiv 2021.05.27.446040; doi: https://doi.org/10.1101/2021.05.27.446040

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