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A homing suppression gene drive with multiplexed gRNAs maintains high drive conversion efficiency and avoids functional resistance alleles

Emily Yang, Matthew Metzloff, Anna M. Langmüller, Andrew G. Clark, Philipp W. Messer, View ORCID ProfileJackson Champer
doi: https://doi.org/10.1101/2021.05.27.446071
Emily Yang
1Department of Computational Biology, Cornell University, Ithaca, NY 14853
2Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853
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Matthew Metzloff
1Department of Computational Biology, Cornell University, Ithaca, NY 14853
2Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853
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Anna M. Langmüller
1Department of Computational Biology, Cornell University, Ithaca, NY 14853
3Institut für Populationsgenetik, Vetmeduni Vienna, Veterinärplatz 1, 1210 Wien, Austria
4Vienna Graduate School of Population Genetics, 1210 Wien, Austria
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Andrew G. Clark
1Department of Computational Biology, Cornell University, Ithaca, NY 14853
2Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853
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Philipp W. Messer
1Department of Computational Biology, Cornell University, Ithaca, NY 14853
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Jackson Champer
1Department of Computational Biology, Cornell University, Ithaca, NY 14853
2Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853
5Center for Bioinformatics, School of Life Sciences, Peking-Tsinghua Center for Life Sciences, Peking University, Beijing, China 100871
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  • ORCID record for Jackson Champer
  • For correspondence: jchamper@pku.edu.cn
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ABSTRACT

Gene drives are engineered alleles that can bias inheritance in their favor, allowing them to spread throughout a population. They could potentially be used to modify or suppress pest populations, such as mosquitoes that spread diseases. CRISPR/Cas9 homing drives, which copy themselves by homology-directed repair in drive/wild-type heterozygotes, are a powerful form of gene drive, but they are vulnerable to resistance alleles that preserve the function of their target gene. Such resistance alleles can prevent successful population suppression. Here, we constructed a homing suppression drive in Drosophila melanogaster that utilized multiplexed gRNAs to inhibit the formation of functional resistance alleles in its female fertility target gene. The gRNA target sites were placed close together, preventing reduction in drive conversion efficiency. The construct reached a moderate equilibrium frequency in cage populations without apparent formation of resistance alleles. However, a moderate fitness cost prevented suppression of the cage population. Nevertheless, our results experimentally demonstrate the viability of the multiplexed gRNAs strategy in homing type suppression gene drives.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted May 28, 2021.
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A homing suppression gene drive with multiplexed gRNAs maintains high drive conversion efficiency and avoids functional resistance alleles
Emily Yang, Matthew Metzloff, Anna M. Langmüller, Andrew G. Clark, Philipp W. Messer, Jackson Champer
bioRxiv 2021.05.27.446071; doi: https://doi.org/10.1101/2021.05.27.446071
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A homing suppression gene drive with multiplexed gRNAs maintains high drive conversion efficiency and avoids functional resistance alleles
Emily Yang, Matthew Metzloff, Anna M. Langmüller, Andrew G. Clark, Philipp W. Messer, Jackson Champer
bioRxiv 2021.05.27.446071; doi: https://doi.org/10.1101/2021.05.27.446071

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