Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

Cell-autonomous generation of the wave pattern within the vertebrate segmentation clock

Laurel A. Rohde, View ORCID ProfileArianne Bercowsky-Rama, View ORCID ProfileJose Negrete Jr., Guillaume Valentin, View ORCID ProfileSundar Ram Naganathan, View ORCID ProfileRavi A. Desai, View ORCID ProfilePetr Strnad, Daniele Soroldoni, View ORCID ProfileFrank Jülicher, View ORCID ProfileAndrew C. Oates
doi: https://doi.org/10.1101/2021.05.29.446196
Laurel A. Rohde
1Institute of Bioengineering, EPFL; Lausanne, CH
2Department of Cell and Developmental Biology, UCL; London, UK
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Arianne Bercowsky-Rama
1Institute of Bioengineering, EPFL; Lausanne, CH
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Arianne Bercowsky-Rama
Jose Negrete Jr.
1Institute of Bioengineering, EPFL; Lausanne, CH
3Max Planck Institute for the Physics of Complex Systems; Dresden, DE
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Jose Negrete Jr.
Guillaume Valentin
4Center of PhenoGenomics, EPFL; Lausanne, CH
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Sundar Ram Naganathan
1Institute of Bioengineering, EPFL; Lausanne, CH
5The Francis Crick Institute; London, UK
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Sundar Ram Naganathan
Ravi A. Desai
2Department of Cell and Developmental Biology, UCL; London, UK
6Imperial College London; London, UK
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Ravi A. Desai
Petr Strnad
1Institute of Bioengineering, EPFL; Lausanne, CH
7Viventis Microscopy Sárl; Lausanne, CH
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Petr Strnad
Daniele Soroldoni
1Institute of Bioengineering, EPFL; Lausanne, CH
2Department of Cell and Developmental Biology, UCL; London, UK
8Vienna BioCenter Core Facilities GmbH; Vienna, AU
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Frank Jülicher
3Max Planck Institute for the Physics of Complex Systems; Dresden, DE
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Frank Jülicher
Andrew C. Oates
1Institute of Bioengineering, EPFL; Lausanne, CH
2Department of Cell and Developmental Biology, UCL; London, UK
5The Francis Crick Institute; London, UK
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Andrew C. Oates
  • For correspondence: andrew.oates@epfl.ch
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Supplementary material
  • Preview PDF
Loading

Abstract

Sequential segmentation of the body axis is fundamental to vertebrate embryonic patterning. This relies on the segmentation clock, a multi-cellular oscillating genetic-network, which mainifests as tissue-level kinematic waves of gene expression that arrest at the position of each new segment. How this hallmark wave pattern is generated is an open question. We compare cellular-resolution oscillatory patterns in the embryo to those generated cell-autonomously in culture without extrinsic signals. We find striking similarity, albeit with greater variability in the timing of clock arrest in culture. Our simple physical description of a clock controlled by a noisy cell-intrinsic timer captures these dynamics. We propose the segmentation clock integrates an intrinsic, timer-driven oscillatory program, which underlies the waves and arrest, with extrinsic cues regulating the intrinsic timer’s duration and precision.

One-sentence Summary Segmentation clock and wavefront activities underlying tissue-level wave patterns are cell-autonomous properties in the PSM.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
Back to top
PreviousNext
Posted May 30, 2021.
Download PDF

Supplementary Material

Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
Cell-autonomous generation of the wave pattern within the vertebrate segmentation clock
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
Cell-autonomous generation of the wave pattern within the vertebrate segmentation clock
Laurel A. Rohde, Arianne Bercowsky-Rama, Jose Negrete Jr., Guillaume Valentin, Sundar Ram Naganathan, Ravi A. Desai, Petr Strnad, Daniele Soroldoni, Frank Jülicher, Andrew C. Oates
bioRxiv 2021.05.29.446196; doi: https://doi.org/10.1101/2021.05.29.446196
Reddit logo Twitter logo Facebook logo LinkedIn logo Mendeley logo
Citation Tools
Cell-autonomous generation of the wave pattern within the vertebrate segmentation clock
Laurel A. Rohde, Arianne Bercowsky-Rama, Jose Negrete Jr., Guillaume Valentin, Sundar Ram Naganathan, Ravi A. Desai, Petr Strnad, Daniele Soroldoni, Frank Jülicher, Andrew C. Oates
bioRxiv 2021.05.29.446196; doi: https://doi.org/10.1101/2021.05.29.446196

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Developmental Biology
Subject Areas
All Articles
  • Animal Behavior and Cognition (4683)
  • Biochemistry (10361)
  • Bioengineering (7675)
  • Bioinformatics (26337)
  • Biophysics (13528)
  • Cancer Biology (10686)
  • Cell Biology (15440)
  • Clinical Trials (138)
  • Developmental Biology (8497)
  • Ecology (12821)
  • Epidemiology (2067)
  • Evolutionary Biology (16860)
  • Genetics (11399)
  • Genomics (15478)
  • Immunology (10617)
  • Microbiology (25218)
  • Molecular Biology (10223)
  • Neuroscience (54472)
  • Paleontology (401)
  • Pathology (1668)
  • Pharmacology and Toxicology (2897)
  • Physiology (4342)
  • Plant Biology (9247)
  • Scientific Communication and Education (1586)
  • Synthetic Biology (2558)
  • Systems Biology (6781)
  • Zoology (1466)