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Spike mutation T403R allows bat coronavirus RaTG13 to use human ACE2

View ORCID ProfileFabian Zech, Daniel Schniertshauer, Christoph Jung, Alexandra Herrmann, Qinya Xie, Rayhane Nchioua, Caterina Prelli Bozzo, Meta Volcic, View ORCID ProfileLennart Koepke, Jana Krüger, Sandra Heller, Alexander Kleger, Timo Jacob, View ORCID ProfileKarl-Klaus Conzelmann, View ORCID ProfileArmin Ensser, View ORCID ProfileKonstantin M.J. Sparrer, View ORCID ProfileFrank Kirchhoff
doi: https://doi.org/10.1101/2021.05.31.446386
Fabian Zech
1Institute of Molecular Virology, Ulm University Medical Center, 89081 Ulm, Germany
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  • ORCID record for Fabian Zech
Daniel Schniertshauer
1Institute of Molecular Virology, Ulm University Medical Center, 89081 Ulm, Germany
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Christoph Jung
2Institute of Electrochemistry, Ulm University, 89081 Ulm, Germany
3Helmholtz-Institute Ulm (HIU) Electrochemical Energy Storage, Helmholtz-Straße 16, 89081 Ulm, Germany
4Karlsruhe Institute of Technology (KIT), P.O. Box 3640, 76021 Karlsruhe, Germany
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Alexandra Herrmann
5Institute of Clinical and Molecular Virology, University Hospital Erlangen, Friedrich-Alexander Universität Erlangen-Nürnberg, 91054 Erlangen, Germany
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Qinya Xie
1Institute of Molecular Virology, Ulm University Medical Center, 89081 Ulm, Germany
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Rayhane Nchioua
1Institute of Molecular Virology, Ulm University Medical Center, 89081 Ulm, Germany
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Caterina Prelli Bozzo
1Institute of Molecular Virology, Ulm University Medical Center, 89081 Ulm, Germany
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Meta Volcic
1Institute of Molecular Virology, Ulm University Medical Center, 89081 Ulm, Germany
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Lennart Koepke
1Institute of Molecular Virology, Ulm University Medical Center, 89081 Ulm, Germany
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  • ORCID record for Lennart Koepke
Jana Krüger
6Department of Internal Medicine I, Ulm University Medical Center, 89081 Ulm, Germany
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Sandra Heller
6Department of Internal Medicine I, Ulm University Medical Center, 89081 Ulm, Germany
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Alexander Kleger
6Department of Internal Medicine I, Ulm University Medical Center, 89081 Ulm, Germany
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Timo Jacob
2Institute of Electrochemistry, Ulm University, 89081 Ulm, Germany
3Helmholtz-Institute Ulm (HIU) Electrochemical Energy Storage, Helmholtz-Straße 16, 89081 Ulm, Germany
4Karlsruhe Institute of Technology (KIT), P.O. Box 3640, 76021 Karlsruhe, Germany
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Karl-Klaus Conzelmann
7Max von Pettenkofer-Institute of Virology, Medical Faculty, and Gene Center, Ludwig-Maximilians-Universität München, 81377 Munich, Germany
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Armin Ensser
5Institute of Clinical and Molecular Virology, University Hospital Erlangen, Friedrich-Alexander Universität Erlangen-Nürnberg, 91054 Erlangen, Germany
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Konstantin M.J. Sparrer
1Institute of Molecular Virology, Ulm University Medical Center, 89081 Ulm, Germany
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  • ORCID record for Konstantin M.J. Sparrer
Frank Kirchhoff
1Institute of Molecular Virology, Ulm University Medical Center, 89081 Ulm, Germany
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  • ORCID record for Frank Kirchhoff
  • For correspondence: Frank.Kirchhoff@uni-ulm.de
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ABSTRACT

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the cause of the COVID-19 pandemic, most likely emerged from bats1. A prerequisite for this devastating zoonosis was the ability of the SARS-CoV-2 Spike (S) glycoprotein to use human angiotensin-converting enzyme 2 (ACE2) for viral entry. Although the S protein of the closest related bat virus, RaTG13, shows high similarity to the SARS-CoV-2 S protein it does not efficiently interact with the human ACE2 receptor2. Here, we show that a single T403R mutation allows the RaTG13 S to utilize the human ACE2 receptor for infection of human cells and intestinal organoids. Conversely, mutation of R403T in the SARS-CoV-2 S significantly reduced ACE2-mediated virus infection. The S protein of SARS-CoV-1 that also uses human ACE2 also contains a positive residue (K) at this position, while the S proteins of CoVs utilizing other receptors vary at this location. Our results indicate that the presence of a positively charged amino acid at position 403 in the S protein is critical for efficient utilization of human ACE2. This finding could help to predict the zoonotic potential of animal coronaviruses.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted May 31, 2021.
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Spike mutation T403R allows bat coronavirus RaTG13 to use human ACE2
Fabian Zech, Daniel Schniertshauer, Christoph Jung, Alexandra Herrmann, Qinya Xie, Rayhane Nchioua, Caterina Prelli Bozzo, Meta Volcic, Lennart Koepke, Jana Krüger, Sandra Heller, Alexander Kleger, Timo Jacob, Karl-Klaus Conzelmann, Armin Ensser, Konstantin M.J. Sparrer, Frank Kirchhoff
bioRxiv 2021.05.31.446386; doi: https://doi.org/10.1101/2021.05.31.446386
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Spike mutation T403R allows bat coronavirus RaTG13 to use human ACE2
Fabian Zech, Daniel Schniertshauer, Christoph Jung, Alexandra Herrmann, Qinya Xie, Rayhane Nchioua, Caterina Prelli Bozzo, Meta Volcic, Lennart Koepke, Jana Krüger, Sandra Heller, Alexander Kleger, Timo Jacob, Karl-Klaus Conzelmann, Armin Ensser, Konstantin M.J. Sparrer, Frank Kirchhoff
bioRxiv 2021.05.31.446386; doi: https://doi.org/10.1101/2021.05.31.446386

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