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Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP

View ORCID ProfileChristine E. Carbone, View ORCID ProfileAnna B. Loveland, View ORCID ProfileHoward Gamper Jr., View ORCID ProfileYa-Ming Hou, View ORCID ProfileGabriel Demo, View ORCID ProfileAndrei A. Korostelev
doi: https://doi.org/10.1101/2021.05.31.446434
Christine E. Carbone
1RNA Therapeutics Institute, Department of Biochemistry and Molecular Pharmacology, UMass Medical School, Worcester, MA, USA
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  • ORCID record for Christine E. Carbone
Anna B. Loveland
1RNA Therapeutics Institute, Department of Biochemistry and Molecular Pharmacology, UMass Medical School, Worcester, MA, USA
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Howard Gamper Jr.
2Department of Biochemistry and Molecular Biology, Thomas Jefferson University, Philadelphia, PA, USA
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Ya-Ming Hou
2Department of Biochemistry and Molecular Biology, Thomas Jefferson University, Philadelphia, PA, USA
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Gabriel Demo
1RNA Therapeutics Institute, Department of Biochemistry and Molecular Pharmacology, UMass Medical School, Worcester, MA, USA
3Central European Institute of Technology, Masaryk University, Kamenice 5, Brno, 625 00, Czech Republic
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  • For correspondence: gabriel.demo@ceitec.muni.cz Andrei.Korostelev@umassmed.edu
Andrei A. Korostelev
1RNA Therapeutics Institute, Department of Biochemistry and Molecular Pharmacology, UMass Medical School, Worcester, MA, USA
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  • ORCID record for Andrei A. Korostelev
  • For correspondence: gabriel.demo@ceitec.muni.cz Andrei.Korostelev@umassmed.edu
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Abstract

During translation, a conserved GTPase elongation factor—EF-G in bacteria or eEF2 in eukaryotes—translocates tRNA and mRNA through the ribosome. EF-G has been proposed to act as a flexible motor that propels tRNA and mRNA movement, as a rigid pawl that biases unidirectional translocation resulting from ribosome rearrangements, or by various combinations of motor- and pawl-like mechanisms. Using time-resolved cryo-EM, we visualized GTP-catalyzed translocation without inhibitors, capturing elusive structures of ribosome•EF-G intermediates at near-atomic resolution. Prior to translocation, EF-G binds near peptidyl-tRNA, while the rotated 30S subunit stabilizes the EF-G GTPase center. Reverse 30S rotation releases Pi and translocates peptidyl-tRNA and EF-G by ∼20 Å. An additional 4-Å translocation initiates EF-G dissociation from a transient ribosome state with highly swiveled 30S head. The structures visualize how nearly rigid EF-G rectifies inherent and spontaneous ribosomal dynamics into tRNA-mRNA translocation, whereas GTP hydrolysis and Pi release drive EF-G dissociation.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted May 31, 2021.
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Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP
Christine E. Carbone, Anna B. Loveland, Howard Gamper Jr., Ya-Ming Hou, Gabriel Demo, Andrei A. Korostelev
bioRxiv 2021.05.31.446434; doi: https://doi.org/10.1101/2021.05.31.446434
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Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP
Christine E. Carbone, Anna B. Loveland, Howard Gamper Jr., Ya-Ming Hou, Gabriel Demo, Andrei A. Korostelev
bioRxiv 2021.05.31.446434; doi: https://doi.org/10.1101/2021.05.31.446434

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