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High-affinity, neutralizing antibodies to SARS-CoV-2 can be made in the absence of T follicular helper cells

View ORCID ProfileJennifer S. Chen, View ORCID ProfileRyan D. Chow, Eric Song, Tianyang Mao, Benjamin Israelow, Kathy Kamath, Joel Bozekowski, Winston A. Haynes, Renata B. Filler, Bridget L. Menasche, Jin Wei, Mia Madel Alfajaro, Wenzhi Song, Lei Peng, Lauren Carter, Jason S. Weinstein, Uthaman Gowthaman, View ORCID ProfileSidi Chen, Joe Craft, John C. Shon, View ORCID ProfileAkiko Iwasaki, Craig B. Wilen, Stephanie C. Eisenbarth
doi: https://doi.org/10.1101/2021.06.10.447982
Jennifer S. Chen
1Department of Laboratory Medicine, Yale University School of Medicine; New Haven, CT, USA
2Department of Immunobiology, Yale University School of Medicine; New Haven, CT, USA
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  • ORCID record for Jennifer S. Chen
Ryan D. Chow
3Department of Genetics, Yale University School of Medicine; New Haven, CT, USA
4Systems Biology Institute, Yale University; West Haven, CT, USA
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Eric Song
2Department of Immunobiology, Yale University School of Medicine; New Haven, CT, USA
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Tianyang Mao
2Department of Immunobiology, Yale University School of Medicine; New Haven, CT, USA
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Benjamin Israelow
2Department of Immunobiology, Yale University School of Medicine; New Haven, CT, USA
5Department of Internal Medicine, Section of Infectious Diseases, Yale University School of Medicine; New Haven, CT, USA
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Kathy Kamath
6Serimmune, Inc.; Goleta, CA, USA
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Joel Bozekowski
6Serimmune, Inc.; Goleta, CA, USA
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Winston A. Haynes
6Serimmune, Inc.; Goleta, CA, USA
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Renata B. Filler
1Department of Laboratory Medicine, Yale University School of Medicine; New Haven, CT, USA
2Department of Immunobiology, Yale University School of Medicine; New Haven, CT, USA
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Bridget L. Menasche
1Department of Laboratory Medicine, Yale University School of Medicine; New Haven, CT, USA
2Department of Immunobiology, Yale University School of Medicine; New Haven, CT, USA
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Jin Wei
1Department of Laboratory Medicine, Yale University School of Medicine; New Haven, CT, USA
2Department of Immunobiology, Yale University School of Medicine; New Haven, CT, USA
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Mia Madel Alfajaro
1Department of Laboratory Medicine, Yale University School of Medicine; New Haven, CT, USA
2Department of Immunobiology, Yale University School of Medicine; New Haven, CT, USA
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Wenzhi Song
2Department of Immunobiology, Yale University School of Medicine; New Haven, CT, USA
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Lei Peng
3Department of Genetics, Yale University School of Medicine; New Haven, CT, USA
4Systems Biology Institute, Yale University; West Haven, CT, USA
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Lauren Carter
7Institute for Protein Design, University of Washington; Seattle, WA, USA
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Jason S. Weinstein
8Center for Immunity and Inflammation, Rutgers New Jersey Medical School; Newark, NJ, USA
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Uthaman Gowthaman
9Deparment of Pathology, University of Massachusetts Medical School; Worcester, MA, USA
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Sidi Chen
3Department of Genetics, Yale University School of Medicine; New Haven, CT, USA
4Systems Biology Institute, Yale University; West Haven, CT, USA
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Joe Craft
2Department of Immunobiology, Yale University School of Medicine; New Haven, CT, USA
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John C. Shon
6Serimmune, Inc.; Goleta, CA, USA
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Akiko Iwasaki
2Department of Immunobiology, Yale University School of Medicine; New Haven, CT, USA
10Howard Hughes Medical Institute; Chevy Chase, MD, USA
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  • ORCID record for Akiko Iwasaki
Craig B. Wilen
1Department of Laboratory Medicine, Yale University School of Medicine; New Haven, CT, USA
2Department of Immunobiology, Yale University School of Medicine; New Haven, CT, USA
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  • For correspondence: craig.wilen@yale.edu stephanie.eisenbarth@yale.edu
Stephanie C. Eisenbarth
1Department of Laboratory Medicine, Yale University School of Medicine; New Haven, CT, USA
2Department of Immunobiology, Yale University School of Medicine; New Haven, CT, USA
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  • For correspondence: craig.wilen@yale.edu stephanie.eisenbarth@yale.edu
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Abstract

T follicular helper (Tfh) cells are the conventional drivers of protective, germinal center (GC)-based antiviral antibody responses. However, loss of Tfh cells and GCs has been observed in patients with severe COVID-19. As T cell-B cell interactions and immunoglobulin class switching still occur in these patients, non-canonical pathways of antibody production may be operative during SARS-CoV-2 infection. We found that both Tfh-dependent and -independent antibodies were induced against SARS-CoV-2 as well as influenza A virus. Tfh-independent responses were mediated by a population we call lymph node (LN)-Th1 cells, which remain in the LN and interact with B cells outside of GCs to promote high-affinity but broad-spectrum antibodies. Strikingly, antibodies generated in the presence and absence of Tfh cells displayed similar neutralization potency against homologous SARS-CoV-2 as well as the B.1.351 variant of concern. These data support a new paradigm for the induction of B cell responses during viral infection that enables effective, neutralizing antibody production to complement traditional GCs and even compensate for GCs damaged by viral inflammation.

One-Sentence Summary Complementary pathways of antibody production mediate neutralizing responses to SARS-CoV-2.

Competing Interest Statement

KK, JB, WAH, and JCS declare the following competing interests: ownership of stocks or shares at Serimmune, paid employment at Serimmune, and patent applications on behalf of Serimmune. Yale University (CBW) has a patent pending entitled "Compounds and Compositions for Treating, Ameliorating, and/or Preventing SARS-CoV-2 Infection and/or Complications Thereof." Yale University has committed to rapidly executable nonexclusive royalty-free licenses to intellectual property rights for the purpose of making and distributing products to prevent, diagnose, and treat COVID-19 infection during the pandemic and for a short period thereafter.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted June 11, 2021.
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High-affinity, neutralizing antibodies to SARS-CoV-2 can be made in the absence of T follicular helper cells
Jennifer S. Chen, Ryan D. Chow, Eric Song, Tianyang Mao, Benjamin Israelow, Kathy Kamath, Joel Bozekowski, Winston A. Haynes, Renata B. Filler, Bridget L. Menasche, Jin Wei, Mia Madel Alfajaro, Wenzhi Song, Lei Peng, Lauren Carter, Jason S. Weinstein, Uthaman Gowthaman, Sidi Chen, Joe Craft, John C. Shon, Akiko Iwasaki, Craig B. Wilen, Stephanie C. Eisenbarth
bioRxiv 2021.06.10.447982; doi: https://doi.org/10.1101/2021.06.10.447982
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High-affinity, neutralizing antibodies to SARS-CoV-2 can be made in the absence of T follicular helper cells
Jennifer S. Chen, Ryan D. Chow, Eric Song, Tianyang Mao, Benjamin Israelow, Kathy Kamath, Joel Bozekowski, Winston A. Haynes, Renata B. Filler, Bridget L. Menasche, Jin Wei, Mia Madel Alfajaro, Wenzhi Song, Lei Peng, Lauren Carter, Jason S. Weinstein, Uthaman Gowthaman, Sidi Chen, Joe Craft, John C. Shon, Akiko Iwasaki, Craig B. Wilen, Stephanie C. Eisenbarth
bioRxiv 2021.06.10.447982; doi: https://doi.org/10.1101/2021.06.10.447982

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