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Universal and Programmable Thinning and Thickening of Topologically-Active DNA Fluids

View ORCID ProfileD. Michieletto, P. Neill, S. Weir, D. Evans, N Crist, V. A. Martinez, View ORCID ProfileR. M. Robertson-Anderson
doi: https://doi.org/10.1101/2021.06.16.448664
D. Michieletto
1School of Physics and Astronomy, University of Edinburgh, Peter Guthrie Tait Road, Edinburgh, EH9 3FD, UK
2MRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh EH4 2XU, UK
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  • ORCID record for D. Michieletto
P. Neill
3Department of Physics and Biophysics, University of San Diego, 5998 Alcala Park, San Diego, CA, 92110
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S. Weir
4School of Physics and Astronomy, University of Edinburgh, Peter Guthrie Road, Edinburgh, EH9 3FD, UK
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D. Evans
4School of Physics and Astronomy, University of Edinburgh, Peter Guthrie Road, Edinburgh, EH9 3FD, UK
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N Crist
3Department of Physics and Biophysics, University of San Diego, 5998 Alcala Park, San Diego, CA, 92110
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V. A. Martinez
4School of Physics and Astronomy, University of Edinburgh, Peter Guthrie Road, Edinburgh, EH9 3FD, UK
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R. M. Robertson-Anderson
3Department of Physics and Biophysics, University of San Diego, 5998 Alcala Park, San Diego, CA, 92110
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  • For correspondence: randerson@sandiego.edu
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Abstract

Understanding and controlling the rheology of polymeric fluids that are out-of-equilibrium is a fundamental problem in biology and industry. For example, to package, repair, and replicate DNA, cells use enzymes to constantly manipulate DNA topology, length, and structure. Inspired by this impressive feat, we combine experiments with theory and simulations to show that complex fluids of entangled DNA display a rich range of non-equilibrium material properties when undergoing enzymatic reactions that alter their topology and size. We reveal that while enzymatically-active fluids of linear DNA display universal viscous thinning, circular DNA fluids - undergoing the same non-equilibrium process - display thickening with a rate and degree that can be tuned by the DNA and enzyme concentrations. Our results open the way for the topological functionalization of DNA-based materials via naturally occurring enzymes to create a new class of ‘topologically-active’ materials that can autonomously alter their rheological properties in a programmable manner.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • ↵* davide.michieletto{at}ed.ac.uk

  • † randerson{at}sandiego.edu

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted June 16, 2021.
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Universal and Programmable Thinning and Thickening of Topologically-Active DNA Fluids
D. Michieletto, P. Neill, S. Weir, D. Evans, N Crist, V. A. Martinez, R. M. Robertson-Anderson
bioRxiv 2021.06.16.448664; doi: https://doi.org/10.1101/2021.06.16.448664
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Universal and Programmable Thinning and Thickening of Topologically-Active DNA Fluids
D. Michieletto, P. Neill, S. Weir, D. Evans, N Crist, V. A. Martinez, R. M. Robertson-Anderson
bioRxiv 2021.06.16.448664; doi: https://doi.org/10.1101/2021.06.16.448664

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