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A stem-loop RNA RIG-I agonist confers prophylactic and therapeutic protection against acute and chronic SARS-CoV-2 infection in mice

View ORCID ProfileTianyang Mao, View ORCID ProfileBenjamin Israelow, View ORCID ProfileCarolina Lucas, View ORCID ProfileChantal B. F. Vogels, Olga Fedorova, View ORCID ProfileMallery I. Breban, View ORCID ProfileBridget L. Menasche, Huiping Dong, View ORCID ProfileMelissa Linehan, Yale SARS-CoV-2 Genome Surveillance Initiative, View ORCID ProfileCraig B. Wilen, Marie L. Landry, View ORCID ProfileNathan D. Grubaugh, Anna M. Pyle, View ORCID ProfileAkiko Iwasaki
doi: https://doi.org/10.1101/2021.06.16.448754
Tianyang Mao
1Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA
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Benjamin Israelow
1Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA
2Department of Internal Medicine, Section of Infectious Diseases, Yale School of Medicine, New Haven, CT, USA
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Carolina Lucas
1Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA
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Chantal B. F. Vogels
3Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA
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Olga Fedorova
4Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT, USA
8Howard Hughes Medical Institute, Chevy Chase, MD, USA
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Mallery I. Breban
3Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA
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Bridget L. Menasche
5Department of Laboratory Medicine, Yale School of Medicine, New Haven, CT, USA
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Huiping Dong
1Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA
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Melissa Linehan
1Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA
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Craig B. Wilen
1Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA
5Department of Laboratory Medicine, Yale School of Medicine, New Haven, CT, USA
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Marie L. Landry
2Department of Internal Medicine, Section of Infectious Diseases, Yale School of Medicine, New Haven, CT, USA
5Department of Laboratory Medicine, Yale School of Medicine, New Haven, CT, USA
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Nathan D. Grubaugh
3Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA
6Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, USA
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Anna M. Pyle
4Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT, USA
7Department of Chemistry, Yale University, New Haven, CT, USA
8Howard Hughes Medical Institute, Chevy Chase, MD, USA
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Akiko Iwasaki
1Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA
3Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA
4Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT, USA
8Howard Hughes Medical Institute, Chevy Chase, MD, USA
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  • For correspondence: akiko.iwasaki@yale.edu
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Abstract

As SARS-CoV-2 continues to cause morbidity and mortality around the world, there is an urgent need for the development of effective medical countermeasures. Here, we assessed the antiviral capacity of a minimal RIG-I agonist, stem-loop RNA 14 (SLR14), in viral control, disease prevention, post-infection therapy, and cross-variant protection in mouse models of SARS-CoV-2 infection. A single dose of SLR14 prevented viral replication in the lower respiratory tract and development of severe disease in a type I interferon (IFN-I) dependent manner. SLR14 demonstrated remarkable protective capacity against lethal SARS-CoV-2 infection when used prophylactically and retained considerable efficacy as a therapeutic agent. In immunodeficient mice carrying chronic SARS-CoV-2 infection, SLR14 elicited near-sterilizing innate immunity by inducing IFN-I responses in the absence of the adaptive immune system. In the context of infection with variants of concern (VOC), SLR14 conferred broad protection and uncovered an IFN-I resistance gradient across emerging VOC. These findings demonstrate the therapeutic potential of SLR14 as a host-directed, broad-spectrum antiviral for early post-exposure treatment and for treatment of chronically infected immunosuppressed patients.

Competing Interest Statement

A.I. served as a consultant for Spring Discovery, Boehringer Ingelheim, and Adaptive Biotechnologies. A.I., A.M.P., and T.M. filed a patent related to the manuscript as inventors (Application no.: US 2021/0102209). A.I. and A.M.P. are cofounders of RIGImmune. N.D.G. is a consultant for Tempus Labs. Yale University (C.B.W.) has a patent pending related to this work entitled Compounds and Compositions for Treating, Ameliorating, and/or Preventing SARS-CoV-2 Infection and/or Complications Thereof.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted June 17, 2021.
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A stem-loop RNA RIG-I agonist confers prophylactic and therapeutic protection against acute and chronic SARS-CoV-2 infection in mice
Tianyang Mao, Benjamin Israelow, Carolina Lucas, Chantal B. F. Vogels, Olga Fedorova, Mallery I. Breban, Bridget L. Menasche, Huiping Dong, Melissa Linehan, Yale SARS-CoV-2 Genome Surveillance Initiative, Craig B. Wilen, Marie L. Landry, Nathan D. Grubaugh, Anna M. Pyle, Akiko Iwasaki
bioRxiv 2021.06.16.448754; doi: https://doi.org/10.1101/2021.06.16.448754
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A stem-loop RNA RIG-I agonist confers prophylactic and therapeutic protection against acute and chronic SARS-CoV-2 infection in mice
Tianyang Mao, Benjamin Israelow, Carolina Lucas, Chantal B. F. Vogels, Olga Fedorova, Mallery I. Breban, Bridget L. Menasche, Huiping Dong, Melissa Linehan, Yale SARS-CoV-2 Genome Surveillance Initiative, Craig B. Wilen, Marie L. Landry, Nathan D. Grubaugh, Anna M. Pyle, Akiko Iwasaki
bioRxiv 2021.06.16.448754; doi: https://doi.org/10.1101/2021.06.16.448754

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