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Fast alignment and preprocessing of chromatin profiles with Chromap
Haowen Zhang, Li Song, Xiaotao Wang, Haoyu Cheng, Chenfei Wang, Clifford A. Meyer, Tao Liu, Ming Tang, Srinivas Aluru, Feng Yue, X. Shirley Liu, Heng Li
doi: https://doi.org/10.1101/2021.06.18.448995
Haowen Zhang
1School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, GA, USA
Li Song
2Department of Data Science, Dana-Farber Cancer Institute, Boston, MA, USA
3Harvard T.H. Chan School of Public Health, Boston, MA, USA
Xiaotao Wang
4Department of Biochemistry and Molecular Genetics, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA
Haoyu Cheng
2Department of Data Science, Dana-Farber Cancer Institute, Boston, MA, USA
5Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA
Chenfei Wang
2Department of Data Science, Dana-Farber Cancer Institute, Boston, MA, USA
3Harvard T.H. Chan School of Public Health, Boston, MA, USA
Clifford A. Meyer
2Department of Data Science, Dana-Farber Cancer Institute, Boston, MA, USA
3Harvard T.H. Chan School of Public Health, Boston, MA, USA
6Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA, USA
Tao Liu
7Department of Biostatistics and Bioinformatics, Roswell Park Comprehensive Cancer Center, Buffalo, NY, USA
Ming Tang
2Department of Data Science, Dana-Farber Cancer Institute, Boston, MA, USA
Srinivas Aluru
1School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, GA, USA
8Institute for Data Engineering and Science, Georgia Institute of Technology, Atlanta, GA, USA
Feng Yue
4Department of Biochemistry and Molecular Genetics, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA
9Robert H. Lurie Comprehensive Cancer Center of Northwestern University, Chicago, Illinois, USA
X. Shirley Liu
2Department of Data Science, Dana-Farber Cancer Institute, Boston, MA, USA
3Harvard T.H. Chan School of Public Health, Boston, MA, USA
6Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA, USA
Heng Li
2Department of Data Science, Dana-Farber Cancer Institute, Boston, MA, USA
5Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA
Article usage
Posted June 18, 2021.
Fast alignment and preprocessing of chromatin profiles with Chromap
Haowen Zhang, Li Song, Xiaotao Wang, Haoyu Cheng, Chenfei Wang, Clifford A. Meyer, Tao Liu, Ming Tang, Srinivas Aluru, Feng Yue, X. Shirley Liu, Heng Li
bioRxiv 2021.06.18.448995; doi: https://doi.org/10.1101/2021.06.18.448995
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