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A Multiparametric Activity Profiling Platform for Neuron Disease Phenotyping and Drug Screening

View ORCID ProfileBruno Boivin, View ORCID ProfileKasper C.D. Roet, Xuan Huang, Kyle W. Karhohs, View ORCID ProfileMohammad H. Rohban, Jack Sandoe, Ole Wiskow, View ORCID ProfileRie Maeda, Alyssa Grantham, Mary K. Dornon, Jenny Shao, View ORCID ProfileDevlin Frost, Dylan Baker, Kevin Eggan, View ORCID ProfileAnne E. Carpenter, View ORCID ProfileClifford J. Woolf
doi: https://doi.org/10.1101/2021.06.22.449195
Bruno Boivin
1Boston Children’s Hospital, F.M. Kirby Neurobiology Center, Boston, MA, USA
2Harvard Medical School, Department of Neurobiology, Boston, MA, USA
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Kasper C.D. Roet
1Boston Children’s Hospital, F.M. Kirby Neurobiology Center, Boston, MA, USA
2Harvard Medical School, Department of Neurobiology, Boston, MA, USA
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Xuan Huang
1Boston Children’s Hospital, F.M. Kirby Neurobiology Center, Boston, MA, USA
2Harvard Medical School, Department of Neurobiology, Boston, MA, USA
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Kyle W. Karhohs
3Broad Institute of Harvard and MIT, Imaging Platform, Cambridge, MA, USA
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Mohammad H. Rohban
3Broad Institute of Harvard and MIT, Imaging Platform, Cambridge, MA, USA
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Jack Sandoe
4Harvard Stem Cell Institute, Department of Stem Cell and Regenerative Biology, Cambridge, MA, USA
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Ole Wiskow
4Harvard Stem Cell Institute, Department of Stem Cell and Regenerative Biology, Cambridge, MA, USA
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Rie Maeda
1Boston Children’s Hospital, F.M. Kirby Neurobiology Center, Boston, MA, USA
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  • ORCID record for Rie Maeda
Alyssa Grantham
1Boston Children’s Hospital, F.M. Kirby Neurobiology Center, Boston, MA, USA
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Mary K. Dornon
1Boston Children’s Hospital, F.M. Kirby Neurobiology Center, Boston, MA, USA
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Jenny Shao
1Boston Children’s Hospital, F.M. Kirby Neurobiology Center, Boston, MA, USA
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Devlin Frost
1Boston Children’s Hospital, F.M. Kirby Neurobiology Center, Boston, MA, USA
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Dylan Baker
4Harvard Stem Cell Institute, Department of Stem Cell and Regenerative Biology, Cambridge, MA, USA
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Kevin Eggan
4Harvard Stem Cell Institute, Department of Stem Cell and Regenerative Biology, Cambridge, MA, USA
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Anne E. Carpenter
3Broad Institute of Harvard and MIT, Imaging Platform, Cambridge, MA, USA
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Clifford J. Woolf
1Boston Children’s Hospital, F.M. Kirby Neurobiology Center, Boston, MA, USA
2Harvard Medical School, Department of Neurobiology, Boston, MA, USA
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  • For correspondence: clifford.woolf@childrens.harvard.edu
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ABSTRACT

Patient stem cell-derived models enable imaging of complex disease phenotypes and the development of scalable drug discovery platforms. Current preclinical methods for assessing cellular activity do not, however, capture the full intricacies of disease-induced disturbances, and instead typically focus on a single parameter, which impairs both the understanding of disease and the discovery of effective therapeutics. Here, we describe a cloud-based image processing and analysis platform that captures the intricate activity profile revealed by GCaMP fluorescent recordings of intracellular calcium changes and enables discovery of molecules that correct 153 parameters that define the amyotrophic lateral sclerosis motor neuron disease phenotype. In a high-throughput screen we identified compounds that revert the multiparametric disease profile to that found in healthy cells, a novel and robust measure of therapeutic potential quite distinct from unidimensional screening. This platform can guide the development of therapeutics that counteract the multifaceted pathological features of diseased cellular activity.

Competing Interest Statement

The authors declare the following competing financial interests: Kasper C.D. Roet, Kevin Eggan, and Clifford J. Woolf are founders of QurAlis Corporation.

Footnotes

  • ↵† Co-first authors

  • https://github.com/brunoboivin/cellxpedite

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted June 23, 2021.
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A Multiparametric Activity Profiling Platform for Neuron Disease Phenotyping and Drug Screening
Bruno Boivin, Kasper C.D. Roet, Xuan Huang, Kyle W. Karhohs, Mohammad H. Rohban, Jack Sandoe, Ole Wiskow, Rie Maeda, Alyssa Grantham, Mary K. Dornon, Jenny Shao, Devlin Frost, Dylan Baker, Kevin Eggan, Anne E. Carpenter, Clifford J. Woolf
bioRxiv 2021.06.22.449195; doi: https://doi.org/10.1101/2021.06.22.449195
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A Multiparametric Activity Profiling Platform for Neuron Disease Phenotyping and Drug Screening
Bruno Boivin, Kasper C.D. Roet, Xuan Huang, Kyle W. Karhohs, Mohammad H. Rohban, Jack Sandoe, Ole Wiskow, Rie Maeda, Alyssa Grantham, Mary K. Dornon, Jenny Shao, Devlin Frost, Dylan Baker, Kevin Eggan, Anne E. Carpenter, Clifford J. Woolf
bioRxiv 2021.06.22.449195; doi: https://doi.org/10.1101/2021.06.22.449195

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