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Cytoplasmic Colocalization of Granulins and TDP-43 Prion-like Domain Involves Electrostatically Driven Complex Coacervation Tuned by the Redox State of Cysteines

Anukool A. Bhopatkar, Shailendra Dhakal, View ORCID ProfileVijayaraghavan Rangachari
doi: https://doi.org/10.1101/2021.06.25.449959
Anukool A. Bhopatkar
Department of Chemistry and Biochemistry, School of Mathematics and Natural Sciences
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Shailendra Dhakal
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Vijayaraghavan Rangachari
$Center for Molecular and Cellular Biosciences, University of Southern Mississippi, Hattiesburg, MS 39406
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  • ORCID record for Vijayaraghavan Rangachari
  • For correspondence: vijay.rangachari@usm.edu
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Abstract

Cytoplasmic inclusions containing aberrant proteolytic fragments of TDP-43 are associated with frontotemporal lobar degeneration (FTLD) and other related pathologies. In FTLD, TDP-43 is translocated into the cytoplasm and proteolytically cleaved to generate a prion-like domain (PrLD) containing C-terminal fragments (C25 and C35) that form toxic inclusions. Under stress, TDP-43 partitions into membraneless organelles called stress granules (SGs) by coacervating with RNA and other proteins. We were interested in understanding if and how cysteine-rich granulins (GRNs 1-7), which are the proteolytic products of a genetic risk factor in FTLD called progranulin, interact with TDP-43. We show that extracellular GRNs internalize and colocalize with PrLD as puncta in the cytoplasm of neuroblastoma cells but show no presence in SGs. In addition, GRNs and PrLD undergo liquid-liquid phase separation (LLPS) by complex coacervation, or form aggregates via liquid-solid phase separation (LSPS); the dynamics in these phase transitions appear to be driven by the negative charges on GRNs and fine-tuned by the positive charges and the redox state of cysteines. Furthermore, RNA competes with and expunges GRNs from GRN-PrLD condensates, providing a basis for GRN’s absence in SGs. Together, the results bring to bear unique mechanisms by which GRNs could modulate TDP-43 proteinopathies.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted June 25, 2021.
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Cytoplasmic Colocalization of Granulins and TDP-43 Prion-like Domain Involves Electrostatically Driven Complex Coacervation Tuned by the Redox State of Cysteines
Anukool A. Bhopatkar, Shailendra Dhakal, Vijayaraghavan Rangachari
bioRxiv 2021.06.25.449959; doi: https://doi.org/10.1101/2021.06.25.449959
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Cytoplasmic Colocalization of Granulins and TDP-43 Prion-like Domain Involves Electrostatically Driven Complex Coacervation Tuned by the Redox State of Cysteines
Anukool A. Bhopatkar, Shailendra Dhakal, Vijayaraghavan Rangachari
bioRxiv 2021.06.25.449959; doi: https://doi.org/10.1101/2021.06.25.449959

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