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ETV2 primes hematoendothelial gene enhancers prior to hematoendothelial fate commitment

Jeffrey D. Steimle, Chul Kim, Rangarajan D. Nadadur, Zhezhen Wang, Andrew D. Hoffmann, Erika Hanson, Junghun Kweon, Tanvi Sinha, Kyunghee Choi, Brian L. Black, John M. Cunningham, View ORCID ProfileKohta Ikegami, Ivan P. Moskowitz
doi: https://doi.org/10.1101/2021.06.25.449981
Jeffrey D. Steimle
1Departments of Pediatrics, Pathology, and Human Genetics, University of Chicago, Chicago, IL 60637, USA
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Chul Kim
1Departments of Pediatrics, Pathology, and Human Genetics, University of Chicago, Chicago, IL 60637, USA
2Department of Pediatrics, Section of Hematology/Oncology, University of Chicago, Chicago, IL 60637, USA
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Rangarajan D. Nadadur
1Departments of Pediatrics, Pathology, and Human Genetics, University of Chicago, Chicago, IL 60637, USA
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Zhezhen Wang
1Departments of Pediatrics, Pathology, and Human Genetics, University of Chicago, Chicago, IL 60637, USA
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Andrew D. Hoffmann
1Departments of Pediatrics, Pathology, and Human Genetics, University of Chicago, Chicago, IL 60637, USA
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Erika Hanson
1Departments of Pediatrics, Pathology, and Human Genetics, University of Chicago, Chicago, IL 60637, USA
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Junghun Kweon
1Departments of Pediatrics, Pathology, and Human Genetics, University of Chicago, Chicago, IL 60637, USA
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Tanvi Sinha
5Cardiovascular Research Institute, University of California, San Francisco, San Francisco CA 94143, USA
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Kyunghee Choi
6Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, USA
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Brian L. Black
5Cardiovascular Research Institute, University of California, San Francisco, San Francisco CA 94143, USA
7Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco CA 94143, USA
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John M. Cunningham
2Department of Pediatrics, Section of Hematology/Oncology, University of Chicago, Chicago, IL 60637, USA
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Kohta Ikegami
3Division of Molecular and Cardiovascular Biology, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH 45229, USA
4Department of Pediatrics, University of Cincinnati, Cincinnati, OH 45229, USA
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  • ORCID record for Kohta Ikegami
  • For correspondence: imoskowitz@uchicago.edu kohta.ikegami@cchmc.org
Ivan P. Moskowitz
1Departments of Pediatrics, Pathology, and Human Genetics, University of Chicago, Chicago, IL 60637, USA
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  • For correspondence: imoskowitz@uchicago.edu kohta.ikegami@cchmc.org
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SUMMARY

The lineage-determining transcription factor ETV2 is necessary and sufficient for hematoendothelial fate commitment. We investigated how ETV2-driven gene regulatory networks promote hematoendothelial fate commitment. We resolved the sequential determination steps of hematoendothelial versus cardiac differentiation from mouse embryonic stem cells. Etv2 was strongly induced and bound to the enhancers of hematoendothelial genes in a common cardiomyocyte-hematoendothelial mesoderm progenitor. However, only Etv2 itself and Tal1, not other ETV2-bound genes, were induced. Despite ETV2 genomic binding and Etv2 and Tal1 expression, cardiomyogenic fate potential was maintained. A second wave of ETV2-bound target genes was up-regulated during the transition from the common cardiomyocyte-hematoendothelial progenitor to the committed hematoendothelial population. A third wave of ETV-bound genes were subsequently expressed in the committed hematoendothelial population for sub-lineage differentiation. The shift from ETV2 binding to productive transcription, not ETV2 binding to target gene enhancers, drove hematoendothelial fate commitment. This work identifies mechanistic phases of ETV2-dependent gene expression that distinguish hematoendothelial specification, commitment, and differentiation.

HIGHLIGHTS

  • The hematoendothelial master TF ETV2 is expressed in a multipotent mesoderm progenitor.

  • ETV2 binds to target genes in the mesoderm progenitor without target gene activation.

  • ETV2 binding in the mesoderm progenitor does not diminish alternative cardiac fate potential.

  • ETV2-bound target genes are activated upon hematoendothelial fate commitment.

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Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted June 25, 2021.
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ETV2 primes hematoendothelial gene enhancers prior to hematoendothelial fate commitment
Jeffrey D. Steimle, Chul Kim, Rangarajan D. Nadadur, Zhezhen Wang, Andrew D. Hoffmann, Erika Hanson, Junghun Kweon, Tanvi Sinha, Kyunghee Choi, Brian L. Black, John M. Cunningham, Kohta Ikegami, Ivan P. Moskowitz
bioRxiv 2021.06.25.449981; doi: https://doi.org/10.1101/2021.06.25.449981
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ETV2 primes hematoendothelial gene enhancers prior to hematoendothelial fate commitment
Jeffrey D. Steimle, Chul Kim, Rangarajan D. Nadadur, Zhezhen Wang, Andrew D. Hoffmann, Erika Hanson, Junghun Kweon, Tanvi Sinha, Kyunghee Choi, Brian L. Black, John M. Cunningham, Kohta Ikegami, Ivan P. Moskowitz
bioRxiv 2021.06.25.449981; doi: https://doi.org/10.1101/2021.06.25.449981

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