Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

Efficient tagging and purification of endogenous proteins for structural studies by single particle cryo-EM

View ORCID ProfileJianhua Zhao, View ORCID ProfileSuraj Makhija, View ORCID ProfileBo Huang, View ORCID ProfileYifan Cheng
doi: https://doi.org/10.1101/2021.06.25.449985
Jianhua Zhao
1Department of Biochemistry and Biophysics, University of California San Francisco. San Francisco, CA 94143, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Jianhua Zhao
Suraj Makhija
2UC Berkeley – UCSF Joint Graduate Program in Bioengineering, University of California, San Francisco, CA 94143, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Suraj Makhija
Bo Huang
3Department of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, CA 94143, USA
4Chan Zuckerberg Biohub, San Francisco, CA 94158, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Bo Huang
  • For correspondence: Bo.Huang@ucsf.edu Yifan.Cheng@ucsf.edu
Yifan Cheng
1Department of Biochemistry and Biophysics, University of California San Francisco. San Francisco, CA 94143, USA
5Howard Hughes Medical Institute, University of California San Francisco, San Francisco, CA, 94158
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Yifan Cheng
  • For correspondence: Bo.Huang@ucsf.edu Yifan.Cheng@ucsf.edu
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Supplementary material
  • Preview PDF
Loading

ABSTRACT

A major bottleneck in structural biology is producing biologically relevant samples at sufficient quantities. This is particularly true for large protein assemblies where conventional techniques of gene overexpression require substantial optimization, hampering structural studies and drug development efforts. Here we describe a method combining CRISPR/Cas gene editing and fluorescence cell sorting to rapidly tag and purify endogenous human proteins from cell lines, enabling structural analysis of native proteins that are properly folded and assembled. We applied this approach to study the human proteasome from HEK cells and rapidly determined structures of major proteasomal complexes. Structures of the PA28-20S complex reveal the native subunit stoichiometry of PA28 and a distinct functional state of the complex. The efficient strategy for tagging and extracting endogenous proteins described here will enable the structural study of many challenging targets and provide more biologically relevant samples for research and therapeutic development.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
Back to top
PreviousNext
Posted June 25, 2021.
Download PDF

Supplementary Material

Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
Efficient tagging and purification of endogenous proteins for structural studies by single particle cryo-EM
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
Efficient tagging and purification of endogenous proteins for structural studies by single particle cryo-EM
Jianhua Zhao, Suraj Makhija, Bo Huang, Yifan Cheng
bioRxiv 2021.06.25.449985; doi: https://doi.org/10.1101/2021.06.25.449985
Reddit logo Twitter logo Facebook logo LinkedIn logo Mendeley logo
Citation Tools
Efficient tagging and purification of endogenous proteins for structural studies by single particle cryo-EM
Jianhua Zhao, Suraj Makhija, Bo Huang, Yifan Cheng
bioRxiv 2021.06.25.449985; doi: https://doi.org/10.1101/2021.06.25.449985

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Molecular Biology
Subject Areas
All Articles
  • Animal Behavior and Cognition (4229)
  • Biochemistry (9118)
  • Bioengineering (6759)
  • Bioinformatics (23956)
  • Biophysics (12105)
  • Cancer Biology (9505)
  • Cell Biology (13746)
  • Clinical Trials (138)
  • Developmental Biology (7618)
  • Ecology (11669)
  • Epidemiology (2066)
  • Evolutionary Biology (15482)
  • Genetics (10622)
  • Genomics (14302)
  • Immunology (9472)
  • Microbiology (22809)
  • Molecular Biology (9083)
  • Neuroscience (48902)
  • Paleontology (355)
  • Pathology (1479)
  • Pharmacology and Toxicology (2566)
  • Physiology (3829)
  • Plant Biology (8320)
  • Scientific Communication and Education (1468)
  • Synthetic Biology (2294)
  • Systems Biology (6176)
  • Zoology (1297)