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Fast 3D Clear: A Fast, Aqueous, Reversible Three-Day Tissue Clearing Method for Adult and Embryonic Mouse Brain and Whole Body

View ORCID ProfileStylianos Kosmidis, Adrian Negrean, Alex Dranovsky, Attila Losonczy, Eric R. Kandel
doi: https://doi.org/10.1101/2021.06.25.449994
Stylianos Kosmidis
1Zuckerman Mind Brain Behavior Institute, Columbia University New York, NY 10027, USA
3Department of Neuroscience, Columbia University, New York, NY 10027, USA
4Howard Hughes Medical Institute, Columbia University, New York, NY 10027, USA
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  • ORCID record for Stylianos Kosmidis
  • For correspondence: sk3440@columbia.edu
Adrian Negrean
1Zuckerman Mind Brain Behavior Institute, Columbia University New York, NY 10027, USA
3Department of Neuroscience, Columbia University, New York, NY 10027, USA
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Alex Dranovsky
5New York State Psychiatric Institute, New York, NY 10032, USA; Department of Psychiatry, Columbia University, New York, NY 10032, USA
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Attila Losonczy
1Zuckerman Mind Brain Behavior Institute, Columbia University New York, NY 10027, USA
2Kavli Institute for Brain Science, Columbia University, New York, NY 10027, USA
3Department of Neuroscience, Columbia University, New York, NY 10027, USA
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Eric R. Kandel
1Zuckerman Mind Brain Behavior Institute, Columbia University New York, NY 10027, USA
2Kavli Institute for Brain Science, Columbia University, New York, NY 10027, USA
3Department of Neuroscience, Columbia University, New York, NY 10027, USA
4Howard Hughes Medical Institute, Columbia University, New York, NY 10027, USA
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Abstract

To date, a variety of optical clearing methods have emerged that serve as powerful tools to study intact organs and neuronal circuits. Here we describe a newly developed, aqueous clearing protocol named “Fast 3D Clear”, which relies on tetrahydrofuran (THF) for tissue delipidation, and iohexol (Histodenz) for clearing, such that tissues can be imaged under immersion oil in light sheet imaging systems. Fast 3D Clear requires three days to achieve high transparency of adult and embryonic mouse tissues, while maintaining their anatomical integrity, and preserving a vast array of transgenic and viral/dye fluorophores, such as GCaMP3/6, tdTomato, Fast Blue, and IRF670. A unique advantage of Fast 3D Clear is its complete reversibility and thus compatibility with tissue sectioning and immunohistochemistry. Fast 3D Clear can be easily and quickly applied to a wide range of biomedical studies, thereby greatly facilitating the acquisition of high-resolution, two - and three -dimensional images.

Competing Interest Statement

All the authors have filled for a provisional patent application.

Footnotes

  • ↵** Corresponding author and lead contact

  • Main and Supplemental Figures updated

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted August 04, 2021.
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Fast 3D Clear: A Fast, Aqueous, Reversible Three-Day Tissue Clearing Method for Adult and Embryonic Mouse Brain and Whole Body
Stylianos Kosmidis, Adrian Negrean, Alex Dranovsky, Attila Losonczy, Eric R. Kandel
bioRxiv 2021.06.25.449994; doi: https://doi.org/10.1101/2021.06.25.449994
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Fast 3D Clear: A Fast, Aqueous, Reversible Three-Day Tissue Clearing Method for Adult and Embryonic Mouse Brain and Whole Body
Stylianos Kosmidis, Adrian Negrean, Alex Dranovsky, Attila Losonczy, Eric R. Kandel
bioRxiv 2021.06.25.449994; doi: https://doi.org/10.1101/2021.06.25.449994

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