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Evaluation of Host Defense Peptide (CaD23)-Antibiotic Interaction and Mechanism of Action: Insights from Experimental and Molecular Dynamics Simulations Studies

View ORCID ProfileDarren Shu Jeng Ting, Jianguo Li, Chandra S. Verma, Eunice T. L. Goh, Mario Nubile, Leonardo Mastropasqua, Dalia G. Said, Roger W. Beuerman, Rajamani Lakshminarayanan, Imran Mohammed, View ORCID ProfileHarminder S. Dua
doi: https://doi.org/10.1101/2021.06.26.450050
Darren Shu Jeng Ting
1Academic Ophthalmology, Division of Clinical Neuroscience, School of Medicine, University of Nottingham, Nottingham, UK
2Department of Ophthalmology, Queen’s Medical Centre, Nottingham, UK
3Anti-Infectives Research Group, Singapore Eye Research Institute, Singapore
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  • ORCID record for Darren Shu Jeng Ting
Jianguo Li
4Bioinformatics Institute (A*Star), 30 Biopolis Street, #07-01 Matrix, Singapore
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Chandra S. Verma
4Bioinformatics Institute (A*Star), 30 Biopolis Street, #07-01 Matrix, Singapore
5School of Biological Sciences, Nanyang Technological University, Singapore
6Department of Biological Sciences, National University of Singapore, Singapore
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Eunice T. L. Goh
3Anti-Infectives Research Group, Singapore Eye Research Institute, Singapore
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Mario Nubile
7Ophthalmic Clinic, University “G d’Annunzio” of Chieti-Pescara, Chieti, Italy
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Leonardo Mastropasqua
7Ophthalmic Clinic, University “G d’Annunzio” of Chieti-Pescara, Chieti, Italy
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Dalia G. Said
1Academic Ophthalmology, Division of Clinical Neuroscience, School of Medicine, University of Nottingham, Nottingham, UK
2Department of Ophthalmology, Queen’s Medical Centre, Nottingham, UK
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Roger W. Beuerman
3Anti-Infectives Research Group, Singapore Eye Research Institute, Singapore
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Rajamani Lakshminarayanan
3Anti-Infectives Research Group, Singapore Eye Research Institute, Singapore
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Imran Mohammed
1Academic Ophthalmology, Division of Clinical Neuroscience, School of Medicine, University of Nottingham, Nottingham, UK
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Harminder S. Dua
1Academic Ophthalmology, Division of Clinical Neuroscience, School of Medicine, University of Nottingham, Nottingham, UK
2Department of Ophthalmology, Queen’s Medical Centre, Nottingham, UK
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  • ORCID record for Harminder S. Dua
  • For correspondence: Harminder.Dua@nottingham.ac.uk
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ABSTRACT

Background/aim Host defense peptides (HDPs) have the potential to provide a novel solution to antimicrobial resistance (AMR) in view of their unique and broad-spectrum antimicrobial activities. We had recently developed a novel hybrid HDP based on LL-37 and human beta-defensin-2, named CaD23, which was shown to exhibit good in vivo antimicrobial efficacy against Staphylococcus aureus in a bacterial keratitis murine model. This study aimed to examine the potential CaD23-antibiotic synergism and to evaluate the underlying mechanism of action of CaD23.

Methods Antimicrobial efficacy was determined using minimum inhibitory concentration (MIC) assay with broth microdilution method. Peptide-antibiotic interaction was evaluated against S. aureus, methicillin-resistant S. aureus (MRSA), and Pseudomonas aeruginosa using established checkerboard assay and time-kill kinetics assay. Fractional inhibitory concentration index (FICI) was calculated and interpreted as synergistic (FICI<0.5), additive (FICI between 0.5-1.0), indifferent (FICI between >1.0 and ≤4), or antagonistic (FICI>4). SYTOX green uptake assay was performed to determine the membrane-permeabilising action of CaD23. Molecular dynamics (MD) simulations were performed to evaluate the interaction of CaD23 with bacterial and mammalian mimetic membranes.

Results CaD23-amikacin and CaD23-levofloxacin combination treatment exhibited a strong additive effect against S. aureus SH1000 (FICI=0.56) and MRSA43300 (FICI=0.56) but a borderline additive-to-indifferent effect against P. aeruginosa (FIC=1.0-2.0). CaD23 (at 25 μg/ml; 2x MIC) was able to achieve complete killing of S. aureus within 30 mins. When used at sub-MIC concentration (3.1 μg/ml; 0.25x MIC), it was able to expedite the antimicrobial action of amikacin against S. aureus by 50%. The rapid antimicrobial action of CaD23 was attributed to the underlying membrane-permeabilising mechanism of action, evidenced by the SYTOX green uptake assay and MD simulations studies. MD simulations revealed that cationicity, alpha-helicity, amphiphilicity and hydrophobicity (related to the Trp residue at C-terminal) play important roles in the antimicrobial action of CaD23.

Conclusions CaD23 is a novel membrane-active synthetic HDP that can enhance and expedite the antimicrobial action of antibiotics against Gram-positive bacteria when used in combination. MD simulation serves as a useful tool in dissecting the mechanism of action and guiding the design and optimisation of HDPs.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Funding / support: D.S.J.T. is supported by the Medical Research Council / Fight for Sight (FFS) Clinical Research Fellowship (MR/T001674/1), the FFS / John Lee, Royal College of Ophthalmologists Primer Fellowship (24CO4), and the University of Nottingham International Research Collaboration Award (A2RRG1). I.M. acknowledges funding support from the Medical Research Council – Confidence in Concept Scheme (MRC-CIC_2019-028) and the RoseTrees Trust – Project Grant Award (PGL19-2/10120).

  • Conflict of interest: None

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted June 27, 2021.
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Evaluation of Host Defense Peptide (CaD23)-Antibiotic Interaction and Mechanism of Action: Insights from Experimental and Molecular Dynamics Simulations Studies
Darren Shu Jeng Ting, Jianguo Li, Chandra S. Verma, Eunice T. L. Goh, Mario Nubile, Leonardo Mastropasqua, Dalia G. Said, Roger W. Beuerman, Rajamani Lakshminarayanan, Imran Mohammed, Harminder S. Dua
bioRxiv 2021.06.26.450050; doi: https://doi.org/10.1101/2021.06.26.450050
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Evaluation of Host Defense Peptide (CaD23)-Antibiotic Interaction and Mechanism of Action: Insights from Experimental and Molecular Dynamics Simulations Studies
Darren Shu Jeng Ting, Jianguo Li, Chandra S. Verma, Eunice T. L. Goh, Mario Nubile, Leonardo Mastropasqua, Dalia G. Said, Roger W. Beuerman, Rajamani Lakshminarayanan, Imran Mohammed, Harminder S. Dua
bioRxiv 2021.06.26.450050; doi: https://doi.org/10.1101/2021.06.26.450050

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