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Unbiased in vivo exploration of nuclear bodies-enhanced sumoylation reveals that PML orchestrates embryonic stem cell fate

Sarah Tessier, Omar Ferhi, Marie-Claude Geoffroy, Roman Gonzalez-Prieto, View ORCID ProfileAntoine Canat, View ORCID ProfileSamuel Quentin, Marika Pla, Michiko Niwa-Kawakita, Pierre Bercier, Domitille Rérolle, View ORCID ProfilePierre Therizols, View ORCID ProfileEmmanuelle Fabre, View ORCID ProfileAlfred C.O. Vertegaal, View ORCID ProfileHugues de Thé, View ORCID ProfileValérie Lallemand-Breitenbach
doi: https://doi.org/10.1101/2021.06.29.450368
Sarah Tessier
1Cirb, Collège de France, PSL research university, Inserm U1050, Cnrs UMR 7241, 11 place Marcelin Berthelot, 75005 Paris, France
2Inserm U944-Cnrs UMR 7212, Université de Paris, 1 Avenue Claude Vellefaux, Paris, France
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Omar Ferhi
1Cirb, Collège de France, PSL research university, Inserm U1050, Cnrs UMR 7241, 11 place Marcelin Berthelot, 75005 Paris, France
2Inserm U944-Cnrs UMR 7212, Université de Paris, 1 Avenue Claude Vellefaux, Paris, France
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Marie-Claude Geoffroy
1Cirb, Collège de France, PSL research university, Inserm U1050, Cnrs UMR 7241, 11 place Marcelin Berthelot, 75005 Paris, France
2Inserm U944-Cnrs UMR 7212, Université de Paris, 1 Avenue Claude Vellefaux, Paris, France
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Roman Gonzalez-Prieto
3Department of Cell and Chemical Biology, Leiden University Medical Center (LUMC), Einthovenweg 20, 2333, ZC, Leiden, The Netherlands
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Antoine Canat
4Genome Biology (GeBi), Université de Paris, Inserm U944-Cnrs UMR 7212, Institut de Recherche Saint-Louis (IRSL), Hôpital St. Louis, Paris, France
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  • ORCID record for Antoine Canat
Samuel Quentin
5Génome et Cancer, Inserm U944-Cnrs UMR 7212, IRSL, Hôpital St. Louis, Paris, France
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Marika Pla
6Inserm UMRS 1131, IRSL, Université de Paris
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Michiko Niwa-Kawakita
2Inserm U944-Cnrs UMR 7212, Université de Paris, 1 Avenue Claude Vellefaux, Paris, France
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Pierre Bercier
1Cirb, Collège de France, PSL research university, Inserm U1050, Cnrs UMR 7241, 11 place Marcelin Berthelot, 75005 Paris, France
2Inserm U944-Cnrs UMR 7212, Université de Paris, 1 Avenue Claude Vellefaux, Paris, France
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Domitille Rérolle
1Cirb, Collège de France, PSL research university, Inserm U1050, Cnrs UMR 7241, 11 place Marcelin Berthelot, 75005 Paris, France
2Inserm U944-Cnrs UMR 7212, Université de Paris, 1 Avenue Claude Vellefaux, Paris, France
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Pierre Therizols
4Genome Biology (GeBi), Université de Paris, Inserm U944-Cnrs UMR 7212, Institut de Recherche Saint-Louis (IRSL), Hôpital St. Louis, Paris, France
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Emmanuelle Fabre
4Genome Biology (GeBi), Université de Paris, Inserm U944-Cnrs UMR 7212, Institut de Recherche Saint-Louis (IRSL), Hôpital St. Louis, Paris, France
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Alfred C.O. Vertegaal
3Department of Cell and Chemical Biology, Leiden University Medical Center (LUMC), Einthovenweg 20, 2333, ZC, Leiden, The Netherlands
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Hugues de Thé
1Cirb, Collège de France, PSL research university, Inserm U1050, Cnrs UMR 7241, 11 place Marcelin Berthelot, 75005 Paris, France
2Inserm U944-Cnrs UMR 7212, Université de Paris, 1 Avenue Claude Vellefaux, Paris, France
7AP-HP, Service de Biochimie, Hôpital St. Louis
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  • For correspondence: valerie.lallemand@inserm.fr hugues.dethe@inserm.fr
Valérie Lallemand-Breitenbach
1Cirb, Collège de France, PSL research university, Inserm U1050, Cnrs UMR 7241, 11 place Marcelin Berthelot, 75005 Paris, France
2Inserm U944-Cnrs UMR 7212, Université de Paris, 1 Avenue Claude Vellefaux, Paris, France
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  • ORCID record for Valérie Lallemand-Breitenbach
  • For correspondence: valerie.lallemand@inserm.fr hugues.dethe@inserm.fr
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Summary

Membrane-less organelles are condensates formed by phase separation whose functions often remain enigmatic. Upon oxidative stress, PML scaffolds Nuclear Bodies (NBs) to regulate senescence or metabolic adaptation, but their role in pluripotency remains elusive. Here we establish that PML is required for basal SUMO2/3 conjugation in mESCs and oxidative stress-driven sumoylation in mESCs or in vivo. PML NBs create an oxidation-protective environment for UBC9-driven SUMO2/3 conjugation of PML partners, often followed by their poly-ubiquitination and degradation. Differential in vivo proteomics identified several members of the KAP1 complex as PML NB-dependent SUMO2-targets. The latter drives functional activation of this key epigenetic repressor. Accordingly, Pml−/− mESCs re-express transposable elements and display features of totipotent-like cells, a process further enforced by PML-controlled SUMO2-conjugation of DPPA2. Finally, PML is required for adaptive stress responses in mESCs. Collectively, PML orchestrates mESC fate through SUMO2-conjugation of key transcriptional or epigenetic regulators, raising new mechanistic hypotheses about PML roles in normal or cancer stem cells.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Unbiased in vivo exploration of nuclear bodies-enhanced sumoylation reveals that PML orchestrates embryonic stem cell fate
Sarah Tessier, Omar Ferhi, Marie-Claude Geoffroy, Roman Gonzalez-Prieto, Antoine Canat, Samuel Quentin, Marika Pla, Michiko Niwa-Kawakita, Pierre Bercier, Domitille Rérolle, Pierre Therizols, Emmanuelle Fabre, Alfred C.O. Vertegaal, Hugues de Thé, Valérie Lallemand-Breitenbach
bioRxiv 2021.06.29.450368; doi: https://doi.org/10.1101/2021.06.29.450368
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Unbiased in vivo exploration of nuclear bodies-enhanced sumoylation reveals that PML orchestrates embryonic stem cell fate
Sarah Tessier, Omar Ferhi, Marie-Claude Geoffroy, Roman Gonzalez-Prieto, Antoine Canat, Samuel Quentin, Marika Pla, Michiko Niwa-Kawakita, Pierre Bercier, Domitille Rérolle, Pierre Therizols, Emmanuelle Fabre, Alfred C.O. Vertegaal, Hugues de Thé, Valérie Lallemand-Breitenbach
bioRxiv 2021.06.29.450368; doi: https://doi.org/10.1101/2021.06.29.450368

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