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OpenSense: An open-source toolbox for Inertial-Measurement-Unit-based measurement of lower extremity kinematics over long durations

Mazen Al Borno, View ORCID ProfileJohanna O’Day, Vanessa Ibarra, James Dunne, Ajay Seth, Ayman Habib, Carmichael Ong, Jennifer Hicks, Scott Uhlrich, Scott Delp
doi: https://doi.org/10.1101/2021.07.01.450788
Mazen Al Borno
1Department of Computer Science and Engineering, University of Colorado, Denver, Colorado, United States
2Center for Bioengineering, University of Colorado, Anschutz Medical Campus, Aurora, Colorado, United States
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Johanna O’Day
3Department of Bioengineering, Stanford University, Stanford, California, United States
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  • ORCID record for Johanna O’Day
Vanessa Ibarra
4Department of Mechanical Engineering, Stanford University, Stanford, California, United States
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James Dunne
3Department of Bioengineering, Stanford University, Stanford, California, United States
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Ajay Seth
5Department of Biomechanical Engineering, Delft University of Technology, Delft, Netherlands
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Ayman Habib
3Department of Bioengineering, Stanford University, Stanford, California, United States
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Carmichael Ong
3Department of Bioengineering, Stanford University, Stanford, California, United States
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Jennifer Hicks
3Department of Bioengineering, Stanford University, Stanford, California, United States
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Scott Uhlrich
3Department of Bioengineering, Stanford University, Stanford, California, United States
4Department of Mechanical Engineering, Stanford University, Stanford, California, United States
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Scott Delp
3Department of Bioengineering, Stanford University, Stanford, California, United States
4Department of Mechanical Engineering, Stanford University, Stanford, California, United States
6Department of Orthopaedic Surgery, Stanford University, Stanford, California, United States
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  • For correspondence: delp@stanford.edu
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Abstract

Background The ability to measure joint kinematics in natural environments over long durations using inertial measurement units (IMUs) could enable at-home monitoring and personalized treatment of neurological and musculoskeletal disorders. However, drift, or the accumulation of error over time, inhibits the accurate measurement of movement over long durations. We sought to develop an open-source workflow to estimate lower extremity joint kinematics from IMU data that was accurate, and capable of assessing and mitigating drift.

Methods We computed IMU-based estimates of kinematics using sensor fusion and an inverse kinematics approach with a constrained biomechanical model. We measured kinematics for 11 subjects as they performed two 10-minute trials: walking and a repeated sequence of varied lower-extremity movements. To validate the approach, we compared the joint angles computed with IMU orientations to the joint angles computed from optical motion capture using root mean square (RMS) difference and Pearson correlations, and estimated drift using a linear regression on each subject’s RMS differences over time.

Results IMU-based kinematic estimates agreed with optical motion capture; median RMS differences over all subjects and all minutes were between 3-6 degrees for all joint angles except hip rotation and correlation coefficients were moderate to strong (r = 0.60 to 0.87). We observed minimal drift in the RMS differences over ten minutes; the average slopes of the linear fits to these data were near zero (−0.14 to 0.17 deg/min).

Conclusions Our workflow produced joint kinematics consistent with those estimated by optical motion capture, and could mitigate kinematic drift even in the trials of continuous walking without rest, obviating the need for explicit sensor recalibration (e.g. sitting or standing still for a few seconds or zero-velocity updates) used in current drift-mitigation approaches. This could enable long-duration measurements, bringing the field one step closer to estimating kinematics in natural environments.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • ↵* co-first author

  • https://simtk.org/projects/opensense_val

  • List of abbreviations

    (IMU)
    inertial measurement unit
    (IK)
    inverse kinematics
    (RMS)
    root mean square
  • Copyright 
    The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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    Posted July 02, 2021.
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    OpenSense: An open-source toolbox for Inertial-Measurement-Unit-based measurement of lower extremity kinematics over long durations
    Mazen Al Borno, Johanna O’Day, Vanessa Ibarra, James Dunne, Ajay Seth, Ayman Habib, Carmichael Ong, Jennifer Hicks, Scott Uhlrich, Scott Delp
    bioRxiv 2021.07.01.450788; doi: https://doi.org/10.1101/2021.07.01.450788
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    OpenSense: An open-source toolbox for Inertial-Measurement-Unit-based measurement of lower extremity kinematics over long durations
    Mazen Al Borno, Johanna O’Day, Vanessa Ibarra, James Dunne, Ajay Seth, Ayman Habib, Carmichael Ong, Jennifer Hicks, Scott Uhlrich, Scott Delp
    bioRxiv 2021.07.01.450788; doi: https://doi.org/10.1101/2021.07.01.450788

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