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Adolescent Brain Cognitive Development (ABCD) Community MRI Collection and Utilities

View ORCID ProfileEric Feczko, Greg Conan, Scott Marek, Brenden Tervo-Clemmens, Michaela Cordova, Olivia Doyle, Eric Earl, Anders Perrone, Darrick Sturgeon, Rachel Klein, Gareth Harman, Dakota Kilamovich, Robert Hermosillo, Oscar Miranda-Dominguez, Azeez Adebimpe, Maxwell Bertolero, Matthew Cieslak, Sydney Covitz, Timothy Hendrickson, Anthony C. Juliano, Kathy Snider, Lucille A. Moore, Johnny Uriartel, Alice M. Graham, Finn Calabro, Monica D. Rosenberg, Kristina M. Rapuano, BJ Casey, Richard Watts, Donald Hagler, Wesley K. Thompson, Thomas E. Nichols, Elizabeth Hoffman, Beatriz Luna, Hugh Garavan, Theodore D. Satterthwaite, Sarah Feldstein Ewing, Bonnie Nagel, Nico U.F. Dosenbach, Damien A. Fair
doi: https://doi.org/10.1101/2021.07.09.451638
Eric Feczko
1Masonic Institute for the Developing Brain, University of Minnesota Medical School, Minneapolis, MN 55455.
2Department of Pediatrics, University of Minnesota Medical School, Minneapolis, MN 55455.
4Departments of Medical Informatics and Clinical Epidemiology, Oregon Health and Science University, Portland, OR 97239.
5Department of Psychiatry, Oregon Health and Science University, Portland, OR 97239.
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  • ORCID record for Eric Feczko
  • For correspondence: feczk001@umn.edu faird@umn.edu
Greg Conan
1Masonic Institute for the Developing Brain, University of Minnesota Medical School, Minneapolis, MN 55455.
5Department of Psychiatry, Oregon Health and Science University, Portland, OR 97239.
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Scott Marek
6Department of Psychiatry, Washington University School of Medicine, St. Louis, MO 63110
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Brenden Tervo-Clemmens
12Department of Psychiatry, Massachusetts General Hospital, Harvard Medical School, Boston MA, 02114
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Michaela Cordova
5Department of Psychiatry, Oregon Health and Science University, Portland, OR 97239.
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Olivia Doyle
5Department of Psychiatry, Oregon Health and Science University, Portland, OR 97239.
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Eric Earl
5Department of Psychiatry, Oregon Health and Science University, Portland, OR 97239.
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Anders Perrone
1Masonic Institute for the Developing Brain, University of Minnesota Medical School, Minneapolis, MN 55455.
5Department of Psychiatry, Oregon Health and Science University, Portland, OR 97239.
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Darrick Sturgeon
5Department of Psychiatry, Oregon Health and Science University, Portland, OR 97239.
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Rachel Klein
5Department of Psychiatry, Oregon Health and Science University, Portland, OR 97239.
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Gareth Harman
4Departments of Medical Informatics and Clinical Epidemiology, Oregon Health and Science University, Portland, OR 97239.
5Department of Psychiatry, Oregon Health and Science University, Portland, OR 97239.
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Dakota Kilamovich
5Department of Psychiatry, Oregon Health and Science University, Portland, OR 97239.
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Robert Hermosillo
1Masonic Institute for the Developing Brain, University of Minnesota Medical School, Minneapolis, MN 55455.
2Department of Pediatrics, University of Minnesota Medical School, Minneapolis, MN 55455.
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Oscar Miranda-Dominguez
1Masonic Institute for the Developing Brain, University of Minnesota Medical School, Minneapolis, MN 55455.
2Department of Pediatrics, University of Minnesota Medical School, Minneapolis, MN 55455.
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Azeez Adebimpe
20Penn Lifespan Informatics and Neuroimaging Center (PennLINC); University of Pennsylvania Perelman School of Medicine
21Department of Psychiatry; University of Pennsylvania Perelman School of Medicine
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Maxwell Bertolero
20Penn Lifespan Informatics and Neuroimaging Center (PennLINC); University of Pennsylvania Perelman School of Medicine
21Department of Psychiatry; University of Pennsylvania Perelman School of Medicine
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Matthew Cieslak
20Penn Lifespan Informatics and Neuroimaging Center (PennLINC); University of Pennsylvania Perelman School of Medicine
21Department of Psychiatry; University of Pennsylvania Perelman School of Medicine
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Sydney Covitz
20Penn Lifespan Informatics and Neuroimaging Center (PennLINC); University of Pennsylvania Perelman School of Medicine
21Department of Psychiatry; University of Pennsylvania Perelman School of Medicine
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Timothy Hendrickson
1Masonic Institute for the Developing Brain, University of Minnesota Medical School, Minneapolis, MN 55455.
23University of Minnesota Informatics Institute, University of Minnesota, Minneapolis, MN, 55455
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Anthony C. Juliano
13Department of Psychiatry, University of Vermont, Burlington, VT, 05405
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Kathy Snider
5Department of Psychiatry, Oregon Health and Science University, Portland, OR 97239.
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Lucille A. Moore
5Department of Psychiatry, Oregon Health and Science University, Portland, OR 97239.
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Johnny Uriartel
5Department of Psychiatry, Oregon Health and Science University, Portland, OR 97239.
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Alice M. Graham
5Department of Psychiatry, Oregon Health and Science University, Portland, OR 97239.
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Finn Calabro
18Department of Psychiatry, University of Pittsburgh, Pittsburgh, PA, 15213
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Monica D. Rosenberg
19Department of Psychology, University of Chicago, Chicago, IL
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Kristina M. Rapuano
17Department of Psychology, Yale University, New Haven, CT
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BJ Casey
17Department of Psychology, Yale University, New Haven, CT
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Richard Watts
17Department of Psychology, Yale University, New Haven, CT
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Donald Hagler
14Division of Biostatistics, Herbert Wertheim School of Public Health and Human Longevity Science, University of California San Diego, La Jolla, CA
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Wesley K. Thompson
14Division of Biostatistics, Herbert Wertheim School of Public Health and Human Longevity Science, University of California San Diego, La Jolla, CA
24Department of Radiology,University of California San Diego, La Jolla, CA
25Population Neuroscience and Genetics Lab,University of California San Diego, La Jolla, CA
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Thomas E. Nichols
15Oxford Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, Nuffield Department of Population Health, University of Oxford, Oxford, UK
22Wellcome Centre for Integrative Neuroimaging, FMRIB, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, OX3 9DU, United Kingdom
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Elizabeth Hoffman
16National Institute of Drug Abuse (NIDA), Bethesda, MO
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Beatriz Luna
18Department of Psychiatry, University of Pittsburgh, Pittsburgh, PA, 15213
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Hugh Garavan
13Department of Psychiatry, University of Vermont, Burlington, VT, 05405
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Theodore D. Satterthwaite
20Penn Lifespan Informatics and Neuroimaging Center (PennLINC); University of Pennsylvania Perelman School of Medicine
21Department of Psychiatry; University of Pennsylvania Perelman School of Medicine
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Sarah Feldstein Ewing
26Adolescent Neuroscience Center for Health Resilience, University of Rhode Island, Kingston Rhode Island
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Bonnie Nagel
5Department of Psychiatry, Oregon Health and Science University, Portland, OR 97239.
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Nico U.F. Dosenbach
7Department of Neurology, Washington University School of Medicine, St. Louis, MO 63110
8Department of Radiology, Washington University School of Medicine, St. Louis, MO 63110
9Department of Biomedical Engineering, Washington University School of Medicine, St. Louis, MO 63110
10Department of Pediatrics, Washington University School of Medicine, St. Louis, MO 63110
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Damien A. Fair
1Masonic Institute for the Developing Brain, University of Minnesota Medical School, Minneapolis, MN 55455.
2Department of Pediatrics, University of Minnesota Medical School, Minneapolis, MN 55455.
3Institute of Child Development, University of Minnesota Medical School, Minneapolis, MN 55455.
5Department of Psychiatry, Oregon Health and Science University, Portland, OR 97239.
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  • For correspondence: feczk001@umn.edu faird@umn.edu
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Abstract

The Adolescent Brain Cognitive Development Study (ABCD), a 10 year longitudinal neuroimaging study of the largest population based and demographically distributed cohort of 9-10 year olds (N=11,877), was designed to overcome reproducibility limitations of prior child mental health studies. Besides the fantastic wealth of research opportunities, the extremely large size of the ABCD data set also creates enormous data storage, processing, and analysis challenges for researchers. To ensure data privacy and safety, researchers are not currently able to share neuroimaging data derivatives through the central repository at the National Data Archive (NDA). However, sharing derived data amongst researchers laterally can powerfully accelerate scientific progress, to ensure the maximum public benefit is derived from the ABCD study. To simultaneously promote collaboration and data safety, we developed the ABCD-BIDS Community Collection (ABCC), which includes both curated processed data and software utilities for further analyses. The ABCC also enables researchers to upload their own custom-processed versions of ABCD data and derivatives for sharing with the research community. This NeuroResource is meant to serve as the companion guide for the ABCC. In section we describe the ABCC. Section II highlights ABCC utilities that help researchers access, share, and analyze ABCD data, while section III provides two exemplar reproducibility analyses using ABCC utilities. We hope that adoption of the ABCC’s data-safe, open-science framework will boost access and reproducibility, thus facilitating progress in child and adolescent mental health research.

Competing Interest Statement

Drs. Damien Fair and Nico Dosenbach are co-founders, directors, and equity holders of Nous Imaging, Inc., which has licensed the FIRMM software for motion monitoring and feedback at the scanner. These interests have been reviewed and managed by the University of Minnesota in accordance with its Conflict of Interest Policies to make sure to avoid any issues with conflict. If one has concerns that these academic efforts are being improperly directed due to their interests in Nous Imaging, one can contact Department Head Dr. Katie Thomas, or Associate Director of Conflict of Interest Program Jon Guden, at (612) 626-4727 or jguden{at}umn.edu.

Footnotes

  • https://collection3165.readthedocs.io/en/stable/

  • https://nda.nih.gov/edit_collection.html?id=3165

  • https://github.com/ABCD-STUDY/nda-abcd-collection-3165/

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted July 11, 2021.
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Adolescent Brain Cognitive Development (ABCD) Community MRI Collection and Utilities
Eric Feczko, Greg Conan, Scott Marek, Brenden Tervo-Clemmens, Michaela Cordova, Olivia Doyle, Eric Earl, Anders Perrone, Darrick Sturgeon, Rachel Klein, Gareth Harman, Dakota Kilamovich, Robert Hermosillo, Oscar Miranda-Dominguez, Azeez Adebimpe, Maxwell Bertolero, Matthew Cieslak, Sydney Covitz, Timothy Hendrickson, Anthony C. Juliano, Kathy Snider, Lucille A. Moore, Johnny Uriartel, Alice M. Graham, Finn Calabro, Monica D. Rosenberg, Kristina M. Rapuano, BJ Casey, Richard Watts, Donald Hagler, Wesley K. Thompson, Thomas E. Nichols, Elizabeth Hoffman, Beatriz Luna, Hugh Garavan, Theodore D. Satterthwaite, Sarah Feldstein Ewing, Bonnie Nagel, Nico U.F. Dosenbach, Damien A. Fair
bioRxiv 2021.07.09.451638; doi: https://doi.org/10.1101/2021.07.09.451638
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Adolescent Brain Cognitive Development (ABCD) Community MRI Collection and Utilities
Eric Feczko, Greg Conan, Scott Marek, Brenden Tervo-Clemmens, Michaela Cordova, Olivia Doyle, Eric Earl, Anders Perrone, Darrick Sturgeon, Rachel Klein, Gareth Harman, Dakota Kilamovich, Robert Hermosillo, Oscar Miranda-Dominguez, Azeez Adebimpe, Maxwell Bertolero, Matthew Cieslak, Sydney Covitz, Timothy Hendrickson, Anthony C. Juliano, Kathy Snider, Lucille A. Moore, Johnny Uriartel, Alice M. Graham, Finn Calabro, Monica D. Rosenberg, Kristina M. Rapuano, BJ Casey, Richard Watts, Donald Hagler, Wesley K. Thompson, Thomas E. Nichols, Elizabeth Hoffman, Beatriz Luna, Hugh Garavan, Theodore D. Satterthwaite, Sarah Feldstein Ewing, Bonnie Nagel, Nico U.F. Dosenbach, Damien A. Fair
bioRxiv 2021.07.09.451638; doi: https://doi.org/10.1101/2021.07.09.451638

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