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Evolution with private resources reverses some changes from long-term evolution with public resources

View ORCID ProfileKatrina van Raay, View ORCID ProfileSergey Stolyar, Jordana Sevigny, View ORCID ProfileJeremy A. Draghi, View ORCID ProfileRichard E. Lenski, View ORCID ProfileChristopher J. Marx, View ORCID ProfileBenjamin Kerr, View ORCID ProfileLuis Zaman
doi: https://doi.org/10.1101/2021.07.11.451942
Katrina van Raay
1Department of Biology, University of Washington, Seattle, WA
2BEACON Center for the Study of Evolution in Action, Michigan State University, East Lansing, MI
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Sergey Stolyar
2BEACON Center for the Study of Evolution in Action, Michigan State University, East Lansing, MI
3Department of Biological Sciences, University of Idaho, Moscow, ID
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Jordana Sevigny
1Department of Biology, University of Washington, Seattle, WA
2BEACON Center for the Study of Evolution in Action, Michigan State University, East Lansing, MI
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Jeremy A. Draghi
4Department of Biological Sciences, Virginia Tech, Blacksburg, VA
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Richard E. Lenski
2BEACON Center for the Study of Evolution in Action, Michigan State University, East Lansing, MI
5Department of Microbiology and Molecular Sciences; Michigan State University, East Lansing, MI
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Christopher J. Marx
2BEACON Center for the Study of Evolution in Action, Michigan State University, East Lansing, MI
3Department of Biological Sciences, University of Idaho, Moscow, ID
6Institute for Modeling Collaboration and Innovation, University of Idaho, Moscow, ID
7Institute for Bioinformatics and Evolutionary Studies, University of Idaho, Moscow, ID
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Benjamin Kerr
1Department of Biology, University of Washington, Seattle, WA
2BEACON Center for the Study of Evolution in Action, Michigan State University, East Lansing, MI
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Luis Zaman
2BEACON Center for the Study of Evolution in Action, Michigan State University, East Lansing, MI
8Department of Ecology and Evolutionary Biology, and Center for the Study of Complex Systems, University of Michigan, Ann Arbor, MI
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  • For correspondence: zamanlh@umich.edu
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Abstract

A population under selection to improve one trait may evolve a sub-optimal state for another trait due to tradeoffs and other evolutionary constraints. How this evolution affects the capacity of a population to adapt when conditions change to favor the second trait is an open question. We investigated this question using isolates from a lineage spanning 60,000 generations of the Long-Term Evolution Experiment (LTEE) with Escherichia coli, where cells have access to a shared pool of resources, and have evolved increased competitive ability and a concomitant reduction in numerical yield. Using media-in oil emulsions we shifted the focus of selection to numerical yield, where cells grew in isolated patches with private resources. We found that the time spent evolving under shared resources did not affect the ability to re-evolve toward higher numerical yield. The evolution of numerical yield commonly occurred through mutations in the phosphoenolpyruvate phosphotransferase system. These mutants exhibit slower uptake of glucose, making them poorer competitors for public resources, and produce smaller cells that release less carbon as overflow metabolites. Our results demonstrate that mutations that were not part of adaptation under one selective regime may enable access to ancestral phenotypes when selection changes to favor evolutionary reversion.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted July 12, 2021.
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Evolution with private resources reverses some changes from long-term evolution with public resources
Katrina van Raay, Sergey Stolyar, Jordana Sevigny, Jeremy A. Draghi, Richard E. Lenski, Christopher J. Marx, Benjamin Kerr, Luis Zaman
bioRxiv 2021.07.11.451942; doi: https://doi.org/10.1101/2021.07.11.451942
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Evolution with private resources reverses some changes from long-term evolution with public resources
Katrina van Raay, Sergey Stolyar, Jordana Sevigny, Jeremy A. Draghi, Richard E. Lenski, Christopher J. Marx, Benjamin Kerr, Luis Zaman
bioRxiv 2021.07.11.451942; doi: https://doi.org/10.1101/2021.07.11.451942

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