New Results
Critical Assessment of Metagenome Interpretation - the second round of challenges
View ORCID ProfileF. Meyer, A. Fritz, Z.-L. Deng, View ORCID ProfileD. Koslicki, A. Gurevich, G. Robertson, M. Alser, D. Antipov, View ORCID ProfileF. Beghini, D. Bertrand, J. J. Brito, C.T. Brown, J. Buchmann, A. Buluç, B. Chen, R. Chikhi, P. T. Clausen, A. Cristian, P. W. Dabrowski, A. E. Darling, R. Egan, E. Eskin, E. Georganas, E. Goltsman, M. A. Gray, L. H. Hansen, S. Hofmeyr, P. Huang, L. Irber, H. Jia, T. S. Jørgensen, S. D. Kieser, T. Klemetsen, A. Kola, M. Kolmogorov, A. Korobeynikov, J. Kwan, N. LaPierre, View ORCID ProfileC. Lemaitre, C. Li, A. Limasset, F. Malcher-Miranda, S. Mangul, V. R. Marcelino, C. Marchet, P. Marijon, D. Meleshko, D. R. Mende, A. Milanese, N. Nagarajan, J. Nissen, S. Nurk, L. Oliker, L. Paoli, View ORCID ProfileP. Peterlongo, V. C. Piro, J. S. Porter, S. Rasmussen, E. R. Rees, K. Reinert, B. Renard, E. M. Robertsen, View ORCID ProfileG. L. Rosen, H.-J. Ruscheweyh, V. Sarwal, View ORCID ProfileN. Segata, View ORCID ProfileE. Seiler, L. Shi, View ORCID ProfileF. Sun, View ORCID ProfileS. Sunagawa, S. J. Sørensen, A. Thomas, C. Tong, View ORCID ProfileM. Trajkovski, View ORCID ProfileJ. Tremblay, G. Uritskiy, View ORCID ProfileR. Vicedomini, Zi. Wang, Zhe. Wang, View ORCID ProfileZho. Wang, A. Warren, N. P. Willassen, K. Yelick, R. You, G. Zeller, Z. Zhao, S. Zhu, J. Zhu, R. Garrido-Oter, P. Gastmeier, S. Hacquard, S. Häußler, A. Khaledi, F. Maechler, View ORCID ProfileF. Mesny, View ORCID ProfileS. Radutoiu, P. Schulze-Lefert, N. Smit, View ORCID ProfileT. Strowig, A. Bremges, A. Sczyrba, View ORCID ProfileA. C. McHardy
doi: https://doi.org/10.1101/2021.07.12.451567
F. Meyer
1Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany
2Braunschweig Integrated Centre of Systems Biology (BRICS), Braunschweig, Germany
A. Fritz
1Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany
2Braunschweig Integrated Centre of Systems Biology (BRICS), Braunschweig, Germany
3German Center for Infection Research (DZIF), Hannover- Braunschweig site
Z.-L. Deng
1Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany
2Braunschweig Integrated Centre of Systems Biology (BRICS), Braunschweig, Germany
4Cluster of Excellence RESIST (EXC 2155), Hannover Medical School, Hannover, Germany
D. Koslicki
5Pennsylvania State University, State College, United States
A. Gurevich
6St. Petersburg State University, St. Petersburg, Russia
G. Robertson
1Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany
2Braunschweig Integrated Centre of Systems Biology (BRICS), Braunschweig, Germany
M. Alser
7Department of Information Technology and Electrical Engineering, ETH Zürich, Zurich, Switzerland
D. Antipov
8Center for Algorithmic Biotechnology, Saint Petersburg State University, Saint Petersburg, Russia
F. Beghini
9Department CIBIO, University of Trento, Trento, Italy
D. Bertrand
10Genome Institute of Singapore, Singapore, Singapore
J. J. Brito
11University of Southern California, Los Angeles, United States
C.T. Brown
12University of California, Davis, Davis, United States
J. Buchmann
13Institute for Biological Data Science, Heinrich-Heine-University, Düsseldorf, Germany
A. Buluç
14Lawrence Berkeley National Laboratory, Berkeley, United States
15University of California, Berkeley, Berkeley, United States
B. Chen
14Lawrence Berkeley National Laboratory, Berkeley, United States
15University of California, Berkeley, Berkeley, United States
R. Chikhi
16Institut Pasteur, Paris, France
P. T. Clausen
17National Food Institute, Division of global surveillance, Technical University of Denmark, Lyngby, Denmark
A. Cristian
18Drexel University, Philadelphia, United States
19Google Inc., Philadelphia, United States
P. W. Dabrowski
20Robert Koch- Institut, Berlin, Germany
21Hochschule für Technik und Wirtschaft Berlin, Berlin, Germany
A. E. Darling
22University of Technology Sydney, Sydney, Australia
R. Egan
23DOE Joint Genome Institute, Berkeley, United States
24Lawrence Berkeley National Labs, Berkeley, United States
E. Eskin
25University of California, Los Angeles, Los Angeles, United States
E. Georganas
26Intel Corporation, Santa Clara, United States
E. Goltsman
23DOE Joint Genome Institute, Berkeley, United States
24Lawrence Berkeley National Labs, Berkeley, United States
M. A. Gray
18Drexel University, Philadelphia, United States
27Ecological and Evolutionary Signal-processing and Informatics (EESI) lab, Philadelphia, United States.
L. H. Hansen
28University of Copenhagen, Department of Plant and Environmental Science, Thorvaldsensvej 40, 1871 Frederiksberg, Denmark
S. Hofmeyr
14Lawrence Berkeley National Laboratory, Berkeley, United States
15University of California, Berkeley, Berkeley, United States
P. Huang
29School of Computer Science, Fudan University, Shanghai, China
L. Irber
12University of California, Davis, Davis, United States
H. Jia
30BGI-Shenzhen, Shenzhen, China
31Shenzhen Key Laboratory of Human Commensal Microorganisms and Health Research, BGI-Shenzhen, Shenzhen, China
T. S. Jørgensen
32Technical University of Denmark, Novo Nordisk Foundation Center for Biosustainability, Kemitorvet, 220, 328D, 2800 Kgs. Lyngby, Denmark
33Aarhus University, Department of Environmental Science, Frederiksborgvej 399, 4000 Roskilde, Denmark.
S. D. Kieser
34Department of Cell Physiology and Metabolism, Faculty of Medicine, University of Geneva, Geneva, Switzerland
35Swiss Institute of Bioinformatics, Geneva, Switzerland
T. Klemetsen
36The Arctic University of Norway, Tromsø, Norway
A. Kola
37Charité - Universitätsmedizin Berlin, Berlin, Germany
M. Kolmogorov
38Department of Comuter Science and Engineering, University of California San Diego, San Diego, United States
A. Korobeynikov
8Center for Algorithmic Biotechnology, Saint Petersburg State University, Saint Petersburg, Russia
39Department of Statistical Modelling, Saint Petersburg State University, Saint Petersburg, Russia
J. Kwan
40University of Wisconsin - Madison, Madison, United States
N. LaPierre
25University of California, Los Angeles, Los Angeles, United States
C. Lemaitre
41Univ. Rennes, Inria, CNRS, IRISA, Rennes, France
C. Li
10Genome Institute of Singapore, Singapore, Singapore
A. Limasset
42Université Lille, CNRS, CRIStAL , Lille, France
F. Malcher-Miranda
43Hasso Plattner Institute, Digital Engineering Faculty, University of Potsdam, Potsdam, Germany
S. Mangul
11University of Southern California, Los Angeles, United States
V. R. Marcelino
44Sydney Medical School, The University of Sydney, Sydney, Australia
45Centre for Innate Immunity and Infectious Diseases, Hudson Institute of Medical Research, Clayton, Australia
C. Marchet
42Université Lille, CNRS, CRIStAL , Lille, France
P. Marijon
46Department of Computer Science, Inria, Univ. Lille, CNRS, Centrale Lille, UMR 9189 - CRIStAL, Lille, France
D. Meleshko
8Center for Algorithmic Biotechnology, Saint Petersburg State University, Saint Petersburg, Russia
D. R. Mende
47Amsterdam University Medical Center, Amsterdam, The Netherlands
A. Milanese
48Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zürich, Zürich, Switzerland
49Structural and Computational Biology Unit, EMBL, Zürich, Switzerland
N. Nagarajan
50Genome Institute of Singapore, A*STAR, Singapore, Singapore
51National University of Singapore, Singapore, Singapore
J. Nissen
52DTU Health Tech, Kongens Lyngby, Denmark
S. Nurk
53Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, United States, Bethesda, United States
L. Oliker
14Lawrence Berkeley National Laboratory, Berkeley, United States
15University of California, Berkeley, Berkeley, United States
L. Paoli
48Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zürich, Zürich, Switzerland
P. Peterlongo
41Univ. Rennes, Inria, CNRS, IRISA, Rennes, France
V. C. Piro
43Hasso Plattner Institute, Digital Engineering Faculty, University of Potsdam, Potsdam, Germany
J. S. Porter
54University of Virginia, Charlottesville, United States
S. Rasmussen
55Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark
E. R. Rees
40University of Wisconsin - Madison, Madison, United States
K. Reinert
56Institute for Bioinformatics, FU Berlin, Berlin, Germany
B. Renard
57Hasso Plattner Institute, Digital Engineering Faculty, University of Potsdam, Potsdam, Germany, Potsdam, Germany.
58Bioinformatics Unit (MF1), Robert Koch Institute, Berlin, Germany
E. M. Robertsen
36The Arctic University of Norway, Tromsø, Norway
G. L. Rosen
18Drexel University, Philadelphia, United States
27Ecological and Evolutionary Signal-processing and Informatics (EESI) lab, Philadelphia, United States.
59Center for Biological Discovery from Big Data, Philadelphia, United States
H.-J. Ruscheweyh
48Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zürich, Zürich, Switzerland
V. Sarwal
25University of California, Los Angeles, Los Angeles, United States
N. Segata
9Department CIBIO, University of Trento, Trento, Italy
E. Seiler
56Institute for Bioinformatics, FU Berlin, Berlin, Germany
L. Shi
60Florida Polytechnic University, Lakeland, United States
F. Sun
61Quantitative and Computational Biology Department, University of Southern California, Los Angeles, United States
S. Sunagawa
48Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zürich, Zürich, Switzerland
S. J. Sørensen
62University of Copenhagen, Copenhagen, Denmark
A. Thomas
63University of British Columbia, Vancouver, Canada
23DOE Joint Genome Institute, Berkeley, United States
C. Tong
10Genome Institute of Singapore, Singapore, Singapore
M. Trajkovski
34Department of Cell Physiology and Metabolism, Faculty of Medicine, University of Geneva, Geneva, Switzerland
64Diabetes Center, Faculty of Medicine, University of Geneva, Geneva, Switzerland
J. Tremblay
65National Research Council Canada, Montreal, Canada
G. Uritskiy
66Phase Genomics, Seattle, United States
R. Vicedomini
16Institut Pasteur, Paris, France
Zi. Wang
67School of Mathematical Sciences, Fudan University, Shanghai, China
Zhe. Wang
29School of Computer Science, Fudan University, Shanghai, China
Zho. Wang
68Department of Energy Joint Genome Institute, Berkeley, CA, United States
69Environmental Genomics and SystemsBiology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States
70School of Natural Sciences, University of California at Merced, Merced, CA, United States, Berkeley, USA
A. Warren
54University of Virginia, Charlottesville, United States
N. P. Willassen
36The Arctic University of Norway, Tromsø, Norway
K. Yelick
15University of California, Berkeley, Berkeley, United States
14Lawrence Berkeley National Laboratory, Berkeley, United States
R. You
29School of Computer Science, Fudan University, Shanghai, China
G. Zeller
49Structural and Computational Biology Unit, EMBL, Zürich, Switzerland
Z. Zhao
18Drexel University, Philadelphia, United States
S. Zhu
71Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai, China
72Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence (Fudan University), Ministry of Education, Shanghai, China
J. Zhu
30BGI-Shenzhen, Shenzhen, China
31Shenzhen Key Laboratory of Human Commensal Microorganisms and Health Research, BGI-Shenzhen, Shenzhen, China
R. Garrido-Oter
73Max Planck Institute for Plant Breeding Research, Köln, Germany.
P. Gastmeier
37Charité - Universitätsmedizin Berlin, Berlin, Germany
S. Hacquard
73Max Planck Institute for Plant Breeding Research, Köln, Germany.
S. Häußler
74Helmholtz Centre for Infection Research, Braunschweig, Germany
A. Khaledi
74Helmholtz Centre for Infection Research, Braunschweig, Germany
F. Maechler
37Charité - Universitätsmedizin Berlin, Berlin, Germany
F. Mesny
73Max Planck Institute for Plant Breeding Research, Köln, Germany.
S. Radutoiu
75Aarhus University, Aarhus, Denmark
P. Schulze-Lefert
73Max Planck Institute for Plant Breeding Research, Köln, Germany.
N. Smit
74Helmholtz Centre for Infection Research, Braunschweig, Germany
T. Strowig
74Helmholtz Centre for Infection Research, Braunschweig, Germany
A. Bremges
1Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany
3German Center for Infection Research (DZIF), Hannover- Braunschweig site
A. Sczyrba
76Center for Biotechnology (CeBiTec), Bielefeld University, Bielefeld, Germany
A. C. McHardy
1Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany
2Braunschweig Integrated Centre of Systems Biology (BRICS), Braunschweig, Germany
3German Center for Infection Research (DZIF), Hannover- Braunschweig site
4Cluster of Excellence RESIST (EXC 2155), Hannover Medical School, Hannover, Germany
77Technische Universität Braunschweig, Braunschweig, Germany.
Article usage
Posted July 12, 2021.
Critical Assessment of Metagenome Interpretation - the second round of challenges
F. Meyer, A. Fritz, Z.-L. Deng, D. Koslicki, A. Gurevich, G. Robertson, M. Alser, D. Antipov, F. Beghini, D. Bertrand, J. J. Brito, C.T. Brown, J. Buchmann, A. Buluç, B. Chen, R. Chikhi, P. T. Clausen, A. Cristian, P. W. Dabrowski, A. E. Darling, R. Egan, E. Eskin, E. Georganas, E. Goltsman, M. A. Gray, L. H. Hansen, S. Hofmeyr, P. Huang, L. Irber, H. Jia, T. S. Jørgensen, S. D. Kieser, T. Klemetsen, A. Kola, M. Kolmogorov, A. Korobeynikov, J. Kwan, N. LaPierre, C. Lemaitre, C. Li, A. Limasset, F. Malcher-Miranda, S. Mangul, V. R. Marcelino, C. Marchet, P. Marijon, D. Meleshko, D. R. Mende, A. Milanese, N. Nagarajan, J. Nissen, S. Nurk, L. Oliker, L. Paoli, P. Peterlongo, V. C. Piro, J. S. Porter, S. Rasmussen, E. R. Rees, K. Reinert, B. Renard, E. M. Robertsen, G. L. Rosen, H.-J. Ruscheweyh, V. Sarwal, N. Segata, E. Seiler, L. Shi, F. Sun, S. Sunagawa, S. J. Sørensen, A. Thomas, C. Tong, M. Trajkovski, J. Tremblay, G. Uritskiy, R. Vicedomini, Zi. Wang, Zhe. Wang, Zho. Wang, A. Warren, N. P. Willassen, K. Yelick, R. You, G. Zeller, Z. Zhao, S. Zhu, J. Zhu, R. Garrido-Oter, P. Gastmeier, S. Hacquard, S. Häußler, A. Khaledi, F. Maechler, F. Mesny, S. Radutoiu, P. Schulze-Lefert, N. Smit, T. Strowig, A. Bremges, A. Sczyrba, A. C. McHardy
bioRxiv 2021.07.12.451567; doi: https://doi.org/10.1101/2021.07.12.451567
Critical Assessment of Metagenome Interpretation - the second round of challenges
F. Meyer, A. Fritz, Z.-L. Deng, D. Koslicki, A. Gurevich, G. Robertson, M. Alser, D. Antipov, F. Beghini, D. Bertrand, J. J. Brito, C.T. Brown, J. Buchmann, A. Buluç, B. Chen, R. Chikhi, P. T. Clausen, A. Cristian, P. W. Dabrowski, A. E. Darling, R. Egan, E. Eskin, E. Georganas, E. Goltsman, M. A. Gray, L. H. Hansen, S. Hofmeyr, P. Huang, L. Irber, H. Jia, T. S. Jørgensen, S. D. Kieser, T. Klemetsen, A. Kola, M. Kolmogorov, A. Korobeynikov, J. Kwan, N. LaPierre, C. Lemaitre, C. Li, A. Limasset, F. Malcher-Miranda, S. Mangul, V. R. Marcelino, C. Marchet, P. Marijon, D. Meleshko, D. R. Mende, A. Milanese, N. Nagarajan, J. Nissen, S. Nurk, L. Oliker, L. Paoli, P. Peterlongo, V. C. Piro, J. S. Porter, S. Rasmussen, E. R. Rees, K. Reinert, B. Renard, E. M. Robertsen, G. L. Rosen, H.-J. Ruscheweyh, V. Sarwal, N. Segata, E. Seiler, L. Shi, F. Sun, S. Sunagawa, S. J. Sørensen, A. Thomas, C. Tong, M. Trajkovski, J. Tremblay, G. Uritskiy, R. Vicedomini, Zi. Wang, Zhe. Wang, Zho. Wang, A. Warren, N. P. Willassen, K. Yelick, R. You, G. Zeller, Z. Zhao, S. Zhu, J. Zhu, R. Garrido-Oter, P. Gastmeier, S. Hacquard, S. Häußler, A. Khaledi, F. Maechler, F. Mesny, S. Radutoiu, P. Schulze-Lefert, N. Smit, T. Strowig, A. Bremges, A. Sczyrba, A. C. McHardy
bioRxiv 2021.07.12.451567; doi: https://doi.org/10.1101/2021.07.12.451567
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