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Co-translational assembly counteracts promiscuous interactions

View ORCID ProfileMaximilian Seidel, Anja Becker, View ORCID ProfileFilipa Pereira, View ORCID ProfileJonathan J. M. Landry, View ORCID ProfileNayara Trevisan Doimo de Azevedo, View ORCID ProfileClaudia M. Fusco, Eva Kaindl, Janina Baumbach, View ORCID ProfileJulian D. Langer, View ORCID ProfileErin M. Schuman, View ORCID ProfileKiran Raosaheb Patil, View ORCID ProfileGerhard Hummer, View ORCID ProfileVladimir Benes, View ORCID ProfileMartin Beck
doi: https://doi.org/10.1101/2021.07.13.452229
Maximilian Seidel
1Department of Molecular Sociology, Max Planck Institute of Biophysics, Frankfurt, Germany
2Faculty of Bioscience, Heidelberg University, Heidelberg, Germany
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Anja Becker
1Department of Molecular Sociology, Max Planck Institute of Biophysics, Frankfurt, Germany
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Filipa Pereira
3Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
4Life Sciences Institute, University of Michigan, Ann Arbor, MI, USA
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Jonathan J. M. Landry
5Genomics Core Facility, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
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Nayara Trevisan Doimo de Azevedo
5Genomics Core Facility, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
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Claudia M. Fusco
6Department of Synaptic Plasticity, Max Planck Institute for Brain Research, Frankfurt, Germany
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Eva Kaindl
1Department of Molecular Sociology, Max Planck Institute of Biophysics, Frankfurt, Germany
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Janina Baumbach
1Department of Molecular Sociology, Max Planck Institute of Biophysics, Frankfurt, Germany
3Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
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Julian D. Langer
6Department of Synaptic Plasticity, Max Planck Institute for Brain Research, Frankfurt, Germany
7Membrane Proteomics and Mass Spectrometry, Max Planck Institute of Biophysics, Frankfurt, Germany
8Mass Spectrometry, Max Planck Institute for Brain Research, Frankfurt, Germany
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Erin M. Schuman
6Department of Synaptic Plasticity, Max Planck Institute for Brain Research, Frankfurt, Germany
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Kiran Raosaheb Patil
3Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
9Medical Research Council Toxicology Unit, University of Cambridge, Cambridge, United Kingdom
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Gerhard Hummer
10Department of Theoretical Biophysics, Max Planck Institute of Biophysics, Frankfurt, Germany
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Vladimir Benes
5Genomics Core Facility, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
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Martin Beck
1Department of Molecular Sociology, Max Planck Institute of Biophysics, Frankfurt, Germany
3Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
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  • For correspondence: martin.beck@biophys.mpg.de
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Abstract

During the co-translational assembly of protein complexes, a fully synthesized subunit engages with the nascent chain of a newly synthesized interaction partner. Such events are thought to contribute to productive assembly, but their exact physiological relevance remains underexplored. Here, we examined structural motifs contained in nucleoporins for their potential to facilitate co-translational assembly. We experimentally tested candidate structural motifs and identified several previously unknown co-translational interactions. We demonstrate by selective ribosome profiling that domain invasion motifs of beta-propellers, coiled-coils, and short linear motifs act as co-translational assembly domains. Such motifs are often contained in proteins that are members of multiple complexes (moonlighters) and engage with closely related paralogs. Surprisingly, moonlighters and paralogs assembled co-translationally in only one but not all of the relevant assembly pathways. Our results highlight the regulatory complexity of assembly pathways.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted July 13, 2021.
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Co-translational assembly counteracts promiscuous interactions
Maximilian Seidel, Anja Becker, Filipa Pereira, Jonathan J. M. Landry, Nayara Trevisan Doimo de Azevedo, Claudia M. Fusco, Eva Kaindl, Janina Baumbach, Julian D. Langer, Erin M. Schuman, Kiran Raosaheb Patil, Gerhard Hummer, Vladimir Benes, Martin Beck
bioRxiv 2021.07.13.452229; doi: https://doi.org/10.1101/2021.07.13.452229
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Co-translational assembly counteracts promiscuous interactions
Maximilian Seidel, Anja Becker, Filipa Pereira, Jonathan J. M. Landry, Nayara Trevisan Doimo de Azevedo, Claudia M. Fusco, Eva Kaindl, Janina Baumbach, Julian D. Langer, Erin M. Schuman, Kiran Raosaheb Patil, Gerhard Hummer, Vladimir Benes, Martin Beck
bioRxiv 2021.07.13.452229; doi: https://doi.org/10.1101/2021.07.13.452229

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