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Macrophages govern antiviral responses in human lung tissues protected from SARS-CoV-2 infection

View ORCID ProfileDevin J. Kenney, Aoife K. O’Connell, View ORCID ProfileJacquelyn Turcinovic, View ORCID ProfilePaige Montanaro, View ORCID ProfileRyan M. Hekman, View ORCID ProfileTomokazu Tamura, View ORCID ProfileAndrew R. Berneshawi, Thomas R. Cafiero, Salam Al Abdullatif, Benjamin Blum, View ORCID ProfileStanley I. Goldstein, Brigitte L. Heller, Hans P. Gertje, View ORCID ProfileEsther Bullitt, View ORCID ProfileAlexander J. Trachtenberg, Elizabeth Chavez, Amira Sheikh, Susanna Kurnick, Kyle Grosz, View ORCID ProfileMarkus Bosmann, View ORCID ProfileMaria Ericsson, View ORCID ProfileBertrand R. Huber, View ORCID ProfileMohsan Saeed, View ORCID ProfileAlejandro B. Balazs, View ORCID ProfileKevin P. Francis, View ORCID ProfileAlexander Klose, View ORCID ProfileNeal Paragas, View ORCID ProfileJoshua D. Campbell, View ORCID ProfileJohn H. Connor, View ORCID ProfileAndrew Emili, View ORCID ProfileNicholas A. Crossland, View ORCID ProfileAlexander Ploss, View ORCID ProfileFlorian Douam
doi: https://doi.org/10.1101/2021.07.17.452554
Devin J. Kenney
1Department of Microbiology, Boston University School of Medicine, Boston, MA, USA
2National Emerging Infectious Diseases Laboratories, Boston University, Boston, MA, USA
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  • ORCID record for Devin J. Kenney
Aoife K. O’Connell
1Department of Microbiology, Boston University School of Medicine, Boston, MA, USA
2National Emerging Infectious Diseases Laboratories, Boston University, Boston, MA, USA
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Jacquelyn Turcinovic
2National Emerging Infectious Diseases Laboratories, Boston University, Boston, MA, USA
3Bioinformatics Program, Boston University, Boston, MA, USA
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Paige Montanaro
2National Emerging Infectious Diseases Laboratories, Boston University, Boston, MA, USA
4Department of Pathology and Laboratory Medicine, Boston University School of Medicine, Boston, MA, USA
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Ryan M. Hekman
5Center for Network Systems Biology, Boston University, Boston, MA, USA
6Department of Biochemistry, Boston University School of Medicine, Boston, MA, USA
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Tomokazu Tamura
7Department of Molecular Biology, Princeton University, Princeton, NJ, USA
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Andrew R. Berneshawi
7Department of Molecular Biology, Princeton University, Princeton, NJ, USA
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Thomas R. Cafiero
7Department of Molecular Biology, Princeton University, Princeton, NJ, USA
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Salam Al Abdullatif
8Single Cell RNA Sequencing Core, Boston University, Boston, MA, USA
9Department of Medicine, Boston University School of Medicine, Boston, MA, USA
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Benjamin Blum
5Center for Network Systems Biology, Boston University, Boston, MA, USA
6Department of Biochemistry, Boston University School of Medicine, Boston, MA, USA
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Stanley I. Goldstein
5Center for Network Systems Biology, Boston University, Boston, MA, USA
6Department of Biochemistry, Boston University School of Medicine, Boston, MA, USA
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Brigitte L. Heller
7Department of Molecular Biology, Princeton University, Princeton, NJ, USA
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Hans P. Gertje
2National Emerging Infectious Diseases Laboratories, Boston University, Boston, MA, USA
4Department of Pathology and Laboratory Medicine, Boston University School of Medicine, Boston, MA, USA
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Esther Bullitt
10Department of Physiology and Biophysics, Boston University School of Medicine, Boston, MA, USA
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  • ORCID record for Esther Bullitt
Alexander J. Trachtenberg
1Department of Microbiology, Boston University School of Medicine, Boston, MA, USA
2National Emerging Infectious Diseases Laboratories, Boston University, Boston, MA, USA
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Elizabeth Chavez
1Department of Microbiology, Boston University School of Medicine, Boston, MA, USA
2National Emerging Infectious Diseases Laboratories, Boston University, Boston, MA, USA
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Amira Sheikh
1Department of Microbiology, Boston University School of Medicine, Boston, MA, USA
2National Emerging Infectious Diseases Laboratories, Boston University, Boston, MA, USA
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Susanna Kurnick
2National Emerging Infectious Diseases Laboratories, Boston University, Boston, MA, USA
11Animal Science Center, Boston University, Boston, MA, USA
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Kyle Grosz
2National Emerging Infectious Diseases Laboratories, Boston University, Boston, MA, USA
11Animal Science Center, Boston University, Boston, MA, USA
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Markus Bosmann
9Department of Medicine, Boston University School of Medicine, Boston, MA, USA
12Center for Thrombosis and Hemostasis, University Medical Center of the Johannes Gutenberg-University, Mainz, 55131, Germany
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Maria Ericsson
13Electron Microscopy Core Facility, Harvard Medical School, Boston, MA, USA
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Bertrand R. Huber
14Department of Neurology, Boston University School of Medicine, Boston, MA, USA
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Mohsan Saeed
2National Emerging Infectious Diseases Laboratories, Boston University, Boston, MA, USA
6Department of Biochemistry, Boston University School of Medicine, Boston, MA, USA
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Alejandro B. Balazs
15Ragon Institute of MGH, MIT and Harvard, Cambridge, MA, USA
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Kevin P. Francis
16PerkinElmer, Hopkinton, MA, USA
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Alexander Klose
17In Vivo Analytics, Inc., New York, NY, USA
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Neal Paragas
17In Vivo Analytics, Inc., New York, NY, USA
18Department of Radiology Imaging Research Lab, University of Washington, Seattle, WA, USA
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Joshua D. Campbell
8Single Cell RNA Sequencing Core, Boston University, Boston, MA, USA
9Department of Medicine, Boston University School of Medicine, Boston, MA, USA
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John H. Connor
1Department of Microbiology, Boston University School of Medicine, Boston, MA, USA
2National Emerging Infectious Diseases Laboratories, Boston University, Boston, MA, USA
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Andrew Emili
5Center for Network Systems Biology, Boston University, Boston, MA, USA
6Department of Biochemistry, Boston University School of Medicine, Boston, MA, USA
19Department of Biology, Boston University School of Medicine, Boston, MA, USA
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Nicholas A. Crossland
2National Emerging Infectious Diseases Laboratories, Boston University, Boston, MA, USA
4Department of Pathology and Laboratory Medicine, Boston University School of Medicine, Boston, MA, USA
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  • For correspondence: fdouam@bu.edu aploss@princeton.edu ncrossla@bu.edu
Alexander Ploss
7Department of Molecular Biology, Princeton University, Princeton, NJ, USA
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  • For correspondence: fdouam@bu.edu aploss@princeton.edu ncrossla@bu.edu
Florian Douam
1Department of Microbiology, Boston University School of Medicine, Boston, MA, USA
2National Emerging Infectious Diseases Laboratories, Boston University, Boston, MA, USA
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  • For correspondence: fdouam@bu.edu aploss@princeton.edu ncrossla@bu.edu
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SUMMARY

The majority of SARS-CoV-2 infections among healthy individuals result in asymptomatic to mild disease. However, the immunological mechanisms defining effective lung tissue protection from SARS-CoV-2 infection remain elusive. Unlike mice solely engrafted with human fetal lung xenograft (fLX), mice co-engrafted with fLX and a myeloid-enhanced human immune system (HNFL mice) are protected against SARS-CoV-2 infection, severe inflammation, and histopathology. Effective control of viral infection in HNFL mice associated with significant macrophage infiltration, and the induction of a potent macrophage-mediated interferon response. The pronounced upregulation of the USP18-ISG15 axis (a negative regulator of IFN responses), by macrophages was unique to HNFL mice and represented a prominent correlate of reduced inflammation and histopathology. Altogether, our work shed light on unique cellular and molecular correlates of lung tissue protection during SARS-CoV-2 infection, and underscores macrophage IFN responses as prime targets for developing immunotherapies against coronavirus respiratory diseases.

HIGHLIGHTS

  • Mice engrafted with human fetal lung xenografts (fLX-mice) are highly susceptible to SARS-CoV-2.

  • Co-engraftment with a human myeloid-enriched immune system protected fLX-mice against infection.

  • Tissue protection was defined by a potent and well-balanced antiviral response mediated by infiltrating macrophages.

  • Protective IFN response was dominated by the upregulation of the USP18-ISG15 axis.

Competing Interest Statement

D.K., A.K.O., J.T., P.M., R.M.H., T.T., A.R.B., T.R.C., S.A.A., B.B., S.I.G., B.L.H., H.P.G., E.B., A.T., E.C., A.S., S.K., K.G., M.B., M.A., B.R.H., M.S., A.B.B., J.D.C. J.H.C., A.E., N.A.C., A.P. and F.D declare no conflict of interest. K.P.F. reports that he is an employee of PerkinElmer, Inc., manufacturer of diagnostic and analytical equipment. N.P. and A.K. declare the following competing interest as shareholders of InVivo Analytics with issued patents.

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Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license.
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Macrophages govern antiviral responses in human lung tissues protected from SARS-CoV-2 infection
Devin J. Kenney, Aoife K. O’Connell, Jacquelyn Turcinovic, Paige Montanaro, Ryan M. Hekman, Tomokazu Tamura, Andrew R. Berneshawi, Thomas R. Cafiero, Salam Al Abdullatif, Benjamin Blum, Stanley I. Goldstein, Brigitte L. Heller, Hans P. Gertje, Esther Bullitt, Alexander J. Trachtenberg, Elizabeth Chavez, Amira Sheikh, Susanna Kurnick, Kyle Grosz, Markus Bosmann, Maria Ericsson, Bertrand R. Huber, Mohsan Saeed, Alejandro B. Balazs, Kevin P. Francis, Alexander Klose, Neal Paragas, Joshua D. Campbell, John H. Connor, Andrew Emili, Nicholas A. Crossland, Alexander Ploss, Florian Douam
bioRxiv 2021.07.17.452554; doi: https://doi.org/10.1101/2021.07.17.452554
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Macrophages govern antiviral responses in human lung tissues protected from SARS-CoV-2 infection
Devin J. Kenney, Aoife K. O’Connell, Jacquelyn Turcinovic, Paige Montanaro, Ryan M. Hekman, Tomokazu Tamura, Andrew R. Berneshawi, Thomas R. Cafiero, Salam Al Abdullatif, Benjamin Blum, Stanley I. Goldstein, Brigitte L. Heller, Hans P. Gertje, Esther Bullitt, Alexander J. Trachtenberg, Elizabeth Chavez, Amira Sheikh, Susanna Kurnick, Kyle Grosz, Markus Bosmann, Maria Ericsson, Bertrand R. Huber, Mohsan Saeed, Alejandro B. Balazs, Kevin P. Francis, Alexander Klose, Neal Paragas, Joshua D. Campbell, John H. Connor, Andrew Emili, Nicholas A. Crossland, Alexander Ploss, Florian Douam
bioRxiv 2021.07.17.452554; doi: https://doi.org/10.1101/2021.07.17.452554

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