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A unified framework for measuring selection on cellular lineages and traits

Shunpei Yamauchi, View ORCID ProfileTakashi Nozoe, Reiko Okura, View ORCID ProfileEdo Kussell, View ORCID ProfileYuichi Wakamoto
doi: https://doi.org/10.1101/2021.07.18.452747
Shunpei Yamauchi
1Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo
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Takashi Nozoe
1Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo
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Reiko Okura
1Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo
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Edo Kussell
2Department of Biology, New York University
3Department of Physics, New York University
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Yuichi Wakamoto
1Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo
4Research Center for Complex Systems Biology, The University of Tokyo
5Universal Biology Institute, The University of Tokyo
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  • For correspondence: cwaka@mail.ecc.u-tokyo.ac.jp
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Abstract

Intracellular states probed by gene expression profiles and metabolic activities are intrinsically noisy, causing phenotypic variations among cellular lineages. Understanding the adaptive and evolutionary roles of such variations requires clarifying their linkage to population growth rates. Extending a cell lineage statistics framework, here we show that a population’s growth rate can be expanded by fitness cumulants of any cell lineage trait. The expansion enables quantifying the contribution of each fitness cumulant, such as variance and skewness, to population growth. We introduce a function that contains all the essential information of cell lineage statistics, including mean lineage fitness and selection strength. We reveal a relation between fitness heterogeneity and population growth rate response to perturbation. We apply the framework to experimental cell lineage data from bacteria to mammalian cells, revealing that third or higher-order cumulants’ contributions are negligible under constant growth conditions but could be significant in regrowing processes from growth-arrested conditions. Furthermore, we identify cellular populations in which selection leads to an increase of fitness variance among lineages. The framework assumes no particular growth models or environmental conditions, and is thus applicable to various biological phenomena for which phenotypic heterogeneity and cellular proliferation are important.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted July 19, 2021.
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A unified framework for measuring selection on cellular lineages and traits
Shunpei Yamauchi, Takashi Nozoe, Reiko Okura, Edo Kussell, Yuichi Wakamoto
bioRxiv 2021.07.18.452747; doi: https://doi.org/10.1101/2021.07.18.452747
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A unified framework for measuring selection on cellular lineages and traits
Shunpei Yamauchi, Takashi Nozoe, Reiko Okura, Edo Kussell, Yuichi Wakamoto
bioRxiv 2021.07.18.452747; doi: https://doi.org/10.1101/2021.07.18.452747

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