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The genomic formation of Tanka people, an isolated “Gypsies in water” in the coastal region of Southeast China

View ORCID ProfileGuanglin He, Yunhe Zhang, Lan-Hai Wei, Mengge Wang, Xiaomin Yang, Jianxin Guo, Rong Hu, Chuan-Chao Wang, Xian-Qing Zhang
doi: https://doi.org/10.1101/2021.07.18.452867
Guanglin He
1Department of Anthropology and Ethnology, Institute of Anthropology, National Institute for Data Science in Health and Medicine, State Key Laboratory of Cellular Stress Biology, School of Life Sciences, State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, 361005, China
2School of Humanities, Nanyang Technological University, Nanyang Avenue, 639798, Singapore
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  • For correspondence: Guanglinhe@163.com Ryan.lh.wei@xmu.edu.cn wang@xmu.edu.cn xqz@xmu.edu.cn
Yunhe Zhang
3School of Public Administration, Zhejiang Gongshang University, Hangzhou, 310018, China
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Lan-Hai Wei
1Department of Anthropology and Ethnology, Institute of Anthropology, National Institute for Data Science in Health and Medicine, State Key Laboratory of Cellular Stress Biology, School of Life Sciences, State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, 361005, China
8B&R International Joint Laboratory for Eurasian Anthropology, Fudan University, Shanghai, 200438, China
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  • For correspondence: Guanglinhe@163.com Ryan.lh.wei@xmu.edu.cn wang@xmu.edu.cn xqz@xmu.edu.cn
Mengge Wang
4Guangzhou Forensic Science Institute, Guangzhou, 510080, China
5Faculty of Forensic Medicine, Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, 510080, China
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Xiaomin Yang
1Department of Anthropology and Ethnology, Institute of Anthropology, National Institute for Data Science in Health and Medicine, State Key Laboratory of Cellular Stress Biology, School of Life Sciences, State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, 361005, China
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Jianxin Guo
1Department of Anthropology and Ethnology, Institute of Anthropology, National Institute for Data Science in Health and Medicine, State Key Laboratory of Cellular Stress Biology, School of Life Sciences, State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, 361005, China
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Rong Hu
1Department of Anthropology and Ethnology, Institute of Anthropology, National Institute for Data Science in Health and Medicine, State Key Laboratory of Cellular Stress Biology, School of Life Sciences, State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, 361005, China
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Chuan-Chao Wang
1Department of Anthropology and Ethnology, Institute of Anthropology, National Institute for Data Science in Health and Medicine, State Key Laboratory of Cellular Stress Biology, School of Life Sciences, State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, 361005, China
6School of Basic Medical Sciences, Zhejiang University School of Medicine, Hangzhou, 310000, China
7Institute of Asian Civilizations, Zhejiang University, Hangzhou, 310000, China
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  • For correspondence: Guanglinhe@163.com Ryan.lh.wei@xmu.edu.cn wang@xmu.edu.cn xqz@xmu.edu.cn
Xian-Qing Zhang
1Department of Anthropology and Ethnology, Institute of Anthropology, National Institute for Data Science in Health and Medicine, State Key Laboratory of Cellular Stress Biology, School of Life Sciences, State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, 361005, China
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  • For correspondence: Guanglinhe@163.com Ryan.lh.wei@xmu.edu.cn wang@xmu.edu.cn xqz@xmu.edu.cn
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ABSTRACT

Objectives Three different hypotheses proposed via the controversial evidence from cultural, anthropological and uniparental genetic analysis respectively stated that Tanka people probably originated from Han Chinese, ancient Baiyue tribe, or the admixture of them. Therefore, the genetic origin and admixture history of the Tanka people, an isolated “Gypsies in water” in the coastal region of Southeast China, are needed to be genetically clarified.

Materials and methods To elucidate the genetic origin of the Southeast Tanka people and explore their genetic relationship with surrounding indigenous Tai-Kadai and Austronesian people and Neolithic-to-historic ancients from the Yellow River Basin (YRB) and Fujian, we conducted a large-scale population genomic study among 1498 modern and ancient Eurasians, in which 73 Tanka and 4 Han people were first reported here. Both allele-shared and haplotype-based statistical methods were used here, including PCA, ADMIXTURE, f-statistics, ALDER, qpGraph-/TreeMix and qpAdm/qpWave, ChromoPainter and FineSTRUCTURE

Results We found a specific genetic cline in PCA plots and detected the Tanka-specific homogeneous ancestry in model-based ADMIXTURE results, suggesting differentiated demographic history between Tanka and surrounding Hans. Formal tests based on sharing allele patterns showed a close relationship between Tanka people and Han Chinese, but the Tanka population harbored more southern East Asian ancestry related to Austronesian and Tai-Kadai people compared with southern Hans. Besides, the reconstructed differentiated demographic history revealed that southern Xinshizhou Tanka harbored more ancestry related to the Tai-Kadai or coastal ancient Neolithic to Bronze Age East Asians compared with northern Shacheng Tanka. The qpGraph-/TreeMix-based phylogenetic framework, qpAdm/qpWave-based admixture modeling and FineSTRUCTURE-based dendrogram among ancient northern and southern East Asians further demonstrated that the primary ancestry of modern Tanka derived from ancient millet farmers in the YRB with additional admixture from multiple southern East Asian sources.

Discussion Sharing ancestry estimated from the f-statistics and sharing haplotypic landscape inferred from the ChromoPainter and FineSTRUCTURE showed that Southeast Tanka people not only had a close genetic relationship with both Northern Hans and YRB millet farmers but also possessed more southern East Asian ancestry related to Austronesian, Tai-Kadai and Hmong-Mien people. Our genomic data and fitted admixture models supported modern Tanka originated from ancient North China and obtained additional gene flow from ancient southern East Asians in the processes of southward migrations.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted July 19, 2021.
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The genomic formation of Tanka people, an isolated “Gypsies in water” in the coastal region of Southeast China
Guanglin He, Yunhe Zhang, Lan-Hai Wei, Mengge Wang, Xiaomin Yang, Jianxin Guo, Rong Hu, Chuan-Chao Wang, Xian-Qing Zhang
bioRxiv 2021.07.18.452867; doi: https://doi.org/10.1101/2021.07.18.452867
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The genomic formation of Tanka people, an isolated “Gypsies in water” in the coastal region of Southeast China
Guanglin He, Yunhe Zhang, Lan-Hai Wei, Mengge Wang, Xiaomin Yang, Jianxin Guo, Rong Hu, Chuan-Chao Wang, Xian-Qing Zhang
bioRxiv 2021.07.18.452867; doi: https://doi.org/10.1101/2021.07.18.452867

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