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Machine learning models based on molecular descriptors to predict human and environmental toxicological factors in continental freshwater

View ORCID ProfileRémi Servien, View ORCID ProfileEric Latrille, View ORCID ProfileDominique Patureau, View ORCID ProfileArnaud Hélias
doi: https://doi.org/10.1101/2021.07.20.453034
Rémi Servien
1INRAE, Univ. Montpellier, LBE, 102 Avenue des étangs, F-11000 Narbonne, France
2ChemHouse Research Group, Montpellier, France
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  • For correspondence: remi.servien@inrae.fr
Eric Latrille
1INRAE, Univ. Montpellier, LBE, 102 Avenue des étangs, F-11000 Narbonne, France
2ChemHouse Research Group, Montpellier, France
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Dominique Patureau
1INRAE, Univ. Montpellier, LBE, 102 Avenue des étangs, F-11000 Narbonne, France
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Arnaud Hélias
3ITAP, Univ Montpellier, INRAE, Institut Agro, Montpellier, France
4ELSA, Research group for environmental life cycle sustainability assessment and ELSA-Pact industrial chair, Montpellier, France
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Abstract

It is a real challenge for life cycle assessment practitioners to identify all relevant substances contributing to the ecotoxicity. Once this identification has been made, the lack of corresponding ecotoxicity factors can make the results partial and difficult to interpret. So, it is a real and important challenge to provide ecotoxicity factors for a wide range of compounds. Nevertheless, obtaining such factors using experiments is tedious, time-consuming, and made at a high cost. A modeling method that could predict these factors from easy-to-obtain information on each chemical would be of great value. Here, we present such a method, based on machine learning algorithms, that used molecular descriptors to predict two specific endpoints in continental freshwater for ecotoxicological and human impacts. The different tested machine learning algorithms show good performances on a learning database and the non-linear methods tend to outperform the linear ones. The cluster-then-predict approaches usually show the best performances which suggests that these predicted models must be derived for somewhat similar compounds. Finally, predictions were derived from the validated model for compounds with missing toxicity/ecotoxicity factors.

Highlights

  • Characterization factors (for human health and ecotoxicological impacts) were predicted using molecular descriptors.

  • Several linear or non-linear machine learning methods were compared.

  • The non-linear methods tend to outperform the linear ones using a train and test procedure. Cluster-then-predict approaches often show the best performances, highlighting their usefulness.

  • This methodology was then used to derive characterization factors that were missing for more than a hundred chemicals in USEtox®.

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Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Version 6 of this preprint has been peer-reviewed and recommended by Peer Community In Ecotoxicology and Environmental Chemistry (https://doi.org/10.24072/pci.ecotoxenvchem.100001). This version of the manuscript has been revised to use the PCI template.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted January 12, 2022.
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Machine learning models based on molecular descriptors to predict human and environmental toxicological factors in continental freshwater
Rémi Servien, Eric Latrille, Dominique Patureau, Arnaud Hélias
bioRxiv 2021.07.20.453034; doi: https://doi.org/10.1101/2021.07.20.453034
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Machine learning models based on molecular descriptors to predict human and environmental toxicological factors in continental freshwater
Rémi Servien, Eric Latrille, Dominique Patureau, Arnaud Hélias
bioRxiv 2021.07.20.453034; doi: https://doi.org/10.1101/2021.07.20.453034

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