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Crystal structures of taxane-tubulin complexes: Implications for the mechanism of microtubule stabilization by Taxol

View ORCID ProfileAndrea E. Prota, Daniel Lucena-Agell, Yuntao Ma, Juan Estévez-Gallego, Carlos Roca, Fernando Josa-Prado, Kenneth Goossens, Juan Francisco Giménez-Abián, Shuo Li, Ángeles Canales, Katja Bargsten, José Manuel Andreu, Karl-Heinz Altmann, Natacha Olieric, Shinji Kamimura, Tobias Mühlethaler, View ORCID ProfileMaría A. Oliva, View ORCID ProfileMichel O. Steinmetz, Wei-Shuo Fang, View ORCID ProfileJ. Fernando Díaz
doi: https://doi.org/10.1101/2021.07.20.453061
Andrea E. Prota
1Laboratory of Biomolecular Research, Division of Biology and Chemistry, Paul Scherrer Institut, CH-5232 Villigen, Switzerland
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  • ORCID record for Andrea E. Prota
  • For correspondence: andrea.prota@psi.ch wfang@imm.ac.cn fer@cib.csic.es
Daniel Lucena-Agell
2Centro de Investigaciones Biológicas Margarita Salas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, 28040 Madrid, Spain
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Yuntao Ma
3State Key Laboratory of Bioactive Substances and Functions of Natural Medicines, Institute of Materia Medica, Chinese Academy of Medical Sciences & Peking Union Medical College, 2A Nan Wei Road, Beijing 100050, China
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Juan Estévez-Gallego
2Centro de Investigaciones Biológicas Margarita Salas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, 28040 Madrid, Spain
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Carlos Roca
4Department of Organic Chemistry, Faculty of Chemistry, Universidad Complutense de Madrid. Av. Complutense, s/n, 28040 Madrid
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Fernando Josa-Prado
2Centro de Investigaciones Biológicas Margarita Salas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, 28040 Madrid, Spain
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Kenneth Goossens
2Centro de Investigaciones Biológicas Margarita Salas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, 28040 Madrid, Spain
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Juan Francisco Giménez-Abián
2Centro de Investigaciones Biológicas Margarita Salas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, 28040 Madrid, Spain
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Shuo Li
3State Key Laboratory of Bioactive Substances and Functions of Natural Medicines, Institute of Materia Medica, Chinese Academy of Medical Sciences & Peking Union Medical College, 2A Nan Wei Road, Beijing 100050, China
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Ángeles Canales
2Centro de Investigaciones Biológicas Margarita Salas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, 28040 Madrid, Spain
4Department of Organic Chemistry, Faculty of Chemistry, Universidad Complutense de Madrid. Av. Complutense, s/n, 28040 Madrid
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Katja Bargsten
1Laboratory of Biomolecular Research, Division of Biology and Chemistry, Paul Scherrer Institut, CH-5232 Villigen, Switzerland
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José Manuel Andreu
2Centro de Investigaciones Biológicas Margarita Salas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, 28040 Madrid, Spain
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Karl-Heinz Altmann
5Department of Chemistry and Applied Biosciences, Institute of Pharmaceutical Sciences, ETH, Zürich, Vladimir-Prelog Weg 4, HCI H405, CH-8093 Zürich, Switzerland
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Natacha Olieric
1Laboratory of Biomolecular Research, Division of Biology and Chemistry, Paul Scherrer Institut, CH-5232 Villigen, Switzerland
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Shinji Kamimura
6Department of Biological Sciences, Faculty of Science and Engineering, Chuo University, Kasuga, Bunkyo, Tokyo, Japan
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Tobias Mühlethaler
1Laboratory of Biomolecular Research, Division of Biology and Chemistry, Paul Scherrer Institut, CH-5232 Villigen, Switzerland
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María A. Oliva
2Centro de Investigaciones Biológicas Margarita Salas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, 28040 Madrid, Spain
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Michel O. Steinmetz
1Laboratory of Biomolecular Research, Division of Biology and Chemistry, Paul Scherrer Institut, CH-5232 Villigen, Switzerland
7University of Basel, Biozentrum, 4056 Basel, Switzerland
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Wei-Shuo Fang
3State Key Laboratory of Bioactive Substances and Functions of Natural Medicines, Institute of Materia Medica, Chinese Academy of Medical Sciences & Peking Union Medical College, 2A Nan Wei Road, Beijing 100050, China
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  • For correspondence: andrea.prota@psi.ch wfang@imm.ac.cn fer@cib.csic.es
J. Fernando Díaz
2Centro de Investigaciones Biológicas Margarita Salas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, 28040 Madrid, Spain
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  • For correspondence: andrea.prota@psi.ch wfang@imm.ac.cn fer@cib.csic.es
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Abstract

Paclitaxel (Taxol®) is a first-line chemotherapeutic drug that promotes the curved-to-straight conformational transition of tubulin, an activation step that is necessary for microtubule formation. Crystallization of Taxol bound to tubulin has been long elusive. We found that baccatin III, the core structure of paclitaxel which lacks the C13 side chain, readily co-crystallizes with curved tubulin. Tailor-made taxanes with alternative side chains also co-crystallized, allowing us to investigate their binding modes. Interestingly, these Taxol derived compounds lost their microtubule stabilizing activity and cytotoxicity but kept their full microtubule binding affinity, and all induced lattice expansion upon binding. Additional nuclear magnetic resonance studies propose that Taxol binds to a small fraction of straight tubulin present in solution. Our results suggest a mode of action of Taxol, where the core structure is responsible for the interacting energy while the bulky hydrophobic C13 side chain enables binding selectively to straight tubulin and promotes stabilization.

Competing Interest Statement

The authors have declared no competing interest.

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Posted July 21, 2021.
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Crystal structures of taxane-tubulin complexes: Implications for the mechanism of microtubule stabilization by Taxol
Andrea E. Prota, Daniel Lucena-Agell, Yuntao Ma, Juan Estévez-Gallego, Carlos Roca, Fernando Josa-Prado, Kenneth Goossens, Juan Francisco Giménez-Abián, Shuo Li, Ángeles Canales, Katja Bargsten, José Manuel Andreu, Karl-Heinz Altmann, Natacha Olieric, Shinji Kamimura, Tobias Mühlethaler, María A. Oliva, Michel O. Steinmetz, Wei-Shuo Fang, J. Fernando Díaz
bioRxiv 2021.07.20.453061; doi: https://doi.org/10.1101/2021.07.20.453061
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Crystal structures of taxane-tubulin complexes: Implications for the mechanism of microtubule stabilization by Taxol
Andrea E. Prota, Daniel Lucena-Agell, Yuntao Ma, Juan Estévez-Gallego, Carlos Roca, Fernando Josa-Prado, Kenneth Goossens, Juan Francisco Giménez-Abián, Shuo Li, Ángeles Canales, Katja Bargsten, José Manuel Andreu, Karl-Heinz Altmann, Natacha Olieric, Shinji Kamimura, Tobias Mühlethaler, María A. Oliva, Michel O. Steinmetz, Wei-Shuo Fang, J. Fernando Díaz
bioRxiv 2021.07.20.453061; doi: https://doi.org/10.1101/2021.07.20.453061

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