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Single-cell transcriptomic resolution of stem cells and their developmental trajectories in the hippocampus reveals epigenetic control of cell state perseverance

View ORCID ProfileAdrián Salas-Bastos, View ORCID ProfileMartin Treppner, View ORCID ProfileJosip S. Herman, Dimitrios Koutsogiannis, View ORCID ProfileHarald Binder, View ORCID ProfileMichael B. Stadler, View ORCID ProfileDominic Grün, View ORCID ProfileTanja Vogel
doi: https://doi.org/10.1101/2021.07.21.452775
Adrián Salas-Bastos
1Institute of Anatomy and Cell Biology, Department of Molecular Embryology, Medical Faculty, Albert-Ludwigs-University Freiburg, 79104 Freiburg, Germany
2Faculty of Biology, Albert-Ludwigs-University Freiburg, Freiburg, Germany
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Martin Treppner
3Institute of Medical Biometry and Statistics, Faculty of Medicine and Medical Center, Albert-Ludwigs-University Freiburg, 79104 Freiburg, Germany
4Freiburg Center for Data Analysis and Modeling, Albert-Ludwigs-University Freiburg, 79104 Freiburg, Germany
2Faculty of Biology, Albert-Ludwigs-University Freiburg, Freiburg, Germany
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Josip S. Herman
2Faculty of Biology, Albert-Ludwigs-University Freiburg, Freiburg, Germany
5Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany
6International Max Planck Research School for Molecular and Cellular Biology (IMPRS-MCB), Freiburg, Germany
7Würzburg Institute of Systems Immunology, Julius-Maximilians-University Würzburg, 97078 Würzburg, Germany
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Dimitrios Koutsogiannis
2Faculty of Biology, Albert-Ludwigs-University Freiburg, Freiburg, Germany
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Harald Binder
3Institute of Medical Biometry and Statistics, Faculty of Medicine and Medical Center, Albert-Ludwigs-University Freiburg, 79104 Freiburg, Germany
4Freiburg Center for Data Analysis and Modeling, Albert-Ludwigs-University Freiburg, 79104 Freiburg, Germany
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Michael B. Stadler
8Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland
9SIB Swiss Institute of Bioinformatics, Basel, Switzerland
10Faculty of Science, University of Basel, Basel, Switzerland
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Dominic Grün
5Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany
7Würzburg Institute of Systems Immunology, Julius-Maximilians-University Würzburg, 97078 Würzburg, Germany
11Centre for Integrative Biological Signaling Studies, Albert-Ludwigs-University Freiburg, 79104 Freiburg, Germany
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Tanja Vogel
1Institute of Anatomy and Cell Biology, Department of Molecular Embryology, Medical Faculty, Albert-Ludwigs-University Freiburg, 79104 Freiburg, Germany
12Center for Basics in NeuroModulation (NeuroModul Basics), Medical Faculty, Albert-Ludwigs-University Freiburg, 79104 Freiburg, Germany
13Freiburg Institute for Advanced Studies (FRIAS), Albert-Ludwigs-University Freiburg, 79104 Freiburg, Germany
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  • For correspondence: tanja.vogel@anat.uni-freiburg.de
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Abstract

Despite conceptual research on hippocampus development and the application of single-cell-resolved technologies, the nature and maturation of its diverse progenitor populations are unexplored. The chromatin modifier DOT1L balances progenitor proliferation and differentiation, and conditional loss-of-function mice featured impaired hippocampus development. We applied single-cell RNA sequencing on DOT1L-mutant mice and explored cell trajectories in the E16.5 hippocampus. We resolved in our data five distinct neural stem cell populations with the developmental repertoire to specifically generate the cornu ammonis (CA) 1 field and the dentate gyrus (DG). Within the two developing CA1- and CA3-fields, we identified two distinct maturation states and we thus propose CA1- and CA3-differentiation along the radial axis. In the developing hippocampus, DOT1L is primarily involved in the proper development of CA3 and the DG, and it serves as a state-preserving epigenetic factor that orchestrates the expression of several important transcription factors that impact neuronal differentiation and maturation.

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  • The developing hippocampus contains distinct and spatially separated NSC populations that differ in expression of a specific set of firstly described marker genes.

  • CA pyramidal neurons mature along the radial axis and pass through distinct maturation states.

  • DOT1L preserves the dentate granule cell lineage in the developing hippocampus and limits maturation in the CA1- and CA3-fields development.

  • DOT1L gates cell maturation as upstream regulator of transcription factor expression that confer instrumental roles in hippocampus development.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted July 22, 2021.
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Single-cell transcriptomic resolution of stem cells and their developmental trajectories in the hippocampus reveals epigenetic control of cell state perseverance
Adrián Salas-Bastos, Martin Treppner, Josip S. Herman, Dimitrios Koutsogiannis, Harald Binder, Michael B. Stadler, Dominic Grün, Tanja Vogel
bioRxiv 2021.07.21.452775; doi: https://doi.org/10.1101/2021.07.21.452775
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Single-cell transcriptomic resolution of stem cells and their developmental trajectories in the hippocampus reveals epigenetic control of cell state perseverance
Adrián Salas-Bastos, Martin Treppner, Josip S. Herman, Dimitrios Koutsogiannis, Harald Binder, Michael B. Stadler, Dominic Grün, Tanja Vogel
bioRxiv 2021.07.21.452775; doi: https://doi.org/10.1101/2021.07.21.452775

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