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The RNA m6A binding protein YTHDF2 promotes the B cell to plasma cell transition

David J. Turner, Alexander Saveliev, Fiamma Salerno, Louise S. Matheson, Michael Screen, Hannah Lawson, David Wotherspoon, Kamil R. Kranc, View ORCID ProfileMartin Turner
doi: https://doi.org/10.1101/2021.07.21.453193
David J. Turner
1Immunology Programme, The Babraham Institute, Babraham Research Campus, Cambridge, CB22 3AT, UK
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Alexander Saveliev
1Immunology Programme, The Babraham Institute, Babraham Research Campus, Cambridge, CB22 3AT, UK
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Fiamma Salerno
1Immunology Programme, The Babraham Institute, Babraham Research Campus, Cambridge, CB22 3AT, UK
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Louise S. Matheson
1Immunology Programme, The Babraham Institute, Babraham Research Campus, Cambridge, CB22 3AT, UK
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Michael Screen
1Immunology Programme, The Babraham Institute, Babraham Research Campus, Cambridge, CB22 3AT, UK
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Hannah Lawson
2Laboratory of Haematopoietic Stem Cell & Leukaemia Biology, Centre for Haemato-Oncology, Barts Cancer Institute, Queen Mary University of London, London, EC1M 6BQ, UK
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David Wotherspoon
2Laboratory of Haematopoietic Stem Cell & Leukaemia Biology, Centre for Haemato-Oncology, Barts Cancer Institute, Queen Mary University of London, London, EC1M 6BQ, UK
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Kamil R. Kranc
2Laboratory of Haematopoietic Stem Cell & Leukaemia Biology, Centre for Haemato-Oncology, Barts Cancer Institute, Queen Mary University of London, London, EC1M 6BQ, UK
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Martin Turner
1Immunology Programme, The Babraham Institute, Babraham Research Campus, Cambridge, CB22 3AT, UK
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  • ORCID record for Martin Turner
  • For correspondence: martin.turner@babraham.ac.uk
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Abstract

To identify roles of RNA binding proteins (RBPs) in the differentiation of B cells to antibody-secreting plasma cells we performed a CRISPR/Cas9 knockout screen of 1213 mouse RBPs for their ability to affect proliferation and/or survival, and the emergence of differentiated CD138+ cells in vitro. We identified RBPs that promoted the appearance of CD138+ cells including CSDE1 and STRAP, as well as RBPs that inhibited CD138+ cell appearance such as EIF3 subunits EIF3K and EIF3L. Furthermore, we identified RBPs that share the property of recruiting the CCR4-NOT complex to their target transcripts have the potential to mediate opposing outcomes on B cell differentiation. One such RBP, the m6A binding protein YTHDF2 promotes the appearance of CD138+ cells in vitro. In chimeric mouse models YTHDF2-deficient B cells formed germinal centers in a cell-autonomous manner, however plasma cells failed to accumulate.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted July 21, 2021.
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The RNA m6A binding protein YTHDF2 promotes the B cell to plasma cell transition
David J. Turner, Alexander Saveliev, Fiamma Salerno, Louise S. Matheson, Michael Screen, Hannah Lawson, David Wotherspoon, Kamil R. Kranc, Martin Turner
bioRxiv 2021.07.21.453193; doi: https://doi.org/10.1101/2021.07.21.453193
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The RNA m6A binding protein YTHDF2 promotes the B cell to plasma cell transition
David J. Turner, Alexander Saveliev, Fiamma Salerno, Louise S. Matheson, Michael Screen, Hannah Lawson, David Wotherspoon, Kamil R. Kranc, Martin Turner
bioRxiv 2021.07.21.453193; doi: https://doi.org/10.1101/2021.07.21.453193

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