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A comprehensive collection of transcriptome data to support life cycle analysis of the poplar rust fungus Melampsora larici-populina

Pamela Guerillot, View ORCID ProfileEmmanuelle Morin, View ORCID ProfileAnnegret Kohler, View ORCID ProfileClémentine Louet, View ORCID ProfileSébastien Duplessis
doi: https://doi.org/10.1101/2021.07.25.453710
Pamela Guerillot
1Université de Lorraine, INRAE, UMR 1136 IAM, F-54000 Nancy, France
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Emmanuelle Morin
1Université de Lorraine, INRAE, UMR 1136 IAM, F-54000 Nancy, France
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Annegret Kohler
1Université de Lorraine, INRAE, UMR 1136 IAM, F-54000 Nancy, France
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Clémentine Louet
1Université de Lorraine, INRAE, UMR 1136 IAM, F-54000 Nancy, France
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Sébastien Duplessis
1Université de Lorraine, INRAE, UMR 1136 IAM, F-54000 Nancy, France
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  • ORCID record for Sébastien Duplessis
  • For correspondence: Sebastien.duplessis@inrae.fr
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Abstract

Melampsora larici-populina is an obligate biotrophic plant pathogen responsible for the poplar rust disease. This fungus belongs to the taxonomical order Pucciniales and exhibits a complex heteroecious and macrocyclic life cycle, i.e. it has the capacity to infect two unrelated host plants, larch and poplar, and to form five distinct spore types through the year. The M. larici-populina genome has been sequenced and annotated in 2011 and since, different transcriptomic analyses were conducted at different stages with oligoarrays and later on with RNA-Seq covering most of its life cycle. Here, we collected published transcriptome data for the poplar rust fungus, transposed them for the version 2 of the genome now available at the Joint Genome Institute Mycocosm website and performed normalization of different oligoarray datasets on one hand, and of RNA-Seq on the other hand. We report a comprehensive normalized dataset for this fungus, made available for the community, which allows life cycle transcriptomics analysis.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • https://doi.org/10.6084/m9.figshare.15048822.v1

  • https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE180724

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted July 26, 2021.
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A comprehensive collection of transcriptome data to support life cycle analysis of the poplar rust fungus Melampsora larici-populina
Pamela Guerillot, Emmanuelle Morin, Annegret Kohler, Clémentine Louet, Sébastien Duplessis
bioRxiv 2021.07.25.453710; doi: https://doi.org/10.1101/2021.07.25.453710
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A comprehensive collection of transcriptome data to support life cycle analysis of the poplar rust fungus Melampsora larici-populina
Pamela Guerillot, Emmanuelle Morin, Annegret Kohler, Clémentine Louet, Sébastien Duplessis
bioRxiv 2021.07.25.453710; doi: https://doi.org/10.1101/2021.07.25.453710

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