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Symmetry and simplicity spontaneously emerge from the algorithmic nature of evolution

View ORCID ProfileIain G Johnston, Kamaludin Dingle, View ORCID ProfileSam F. Greenbury, Chico Q. Camargo, Jonathan P. K. Doye, Sebastian E. Ahnert, View ORCID ProfileArd A. Louis
doi: https://doi.org/10.1101/2021.07.28.454038
Iain G Johnston
1Rudolf Peierls Centre for Theoretical Physics, University of Oxford; Oxford, UK
2Department of Mathematics and Computational Biology Unit, University of Bergen; Norway
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  • ORCID record for Iain G Johnston
Kamaludin Dingle
3Centre for Applied Mathematics and Bioinformatics, Department of Mathematics and Natural Sciences, Gulf University for Science and Technology; Kuwait
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Sam F. Greenbury
4Theory of Condensed Matter Group, Cavendish Laboratory, University of Cambridge; Cambridge, UK
5Department of Metabolism, Digestion and Reproduction, Imperial College London; London, UK
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Chico Q. Camargo
6Dept of Computer Science, University of Exeter; Exeter, UK
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Jonathan P. K. Doye
7Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford; Oxford, UK
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Sebastian E. Ahnert
4Theory of Condensed Matter Group, Cavendish Laboratory, University of Cambridge; Cambridge, UK
8Department of Chemical Engineering and Biotechnology, University of Cambridge; Cambridge, UK
9The Alan Turing Institute, British Library; London, UK
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Ard A. Louis
1Rudolf Peierls Centre for Theoretical Physics, University of Oxford; Oxford, UK
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  • For correspondence: ard.louis@physics.ox.ac.uk
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Abstract

Engineers routinely design systems to be modular and symmetric in order to increase robustness to perturbations and to facilitate alterations at a later date. Biological structures also frequently exhibit modularity and symmetry, but the origin of such trends is much less well understood. It can be tempting to assume – by analogy to engineering design – that symmetry and modularity arise from natural selection. But evolution, unlike engineers, cannot plan ahead, and so these traits must also afford some immediate selective advantage which is hard to reconcile with the breadth of systems where symmetry is observed. Here we introduce an alternative non-adaptive hypothesis based on an algorithmic picture of evolution. It suggests that symmetric structures preferentially arise not just due to natural selection, but also because they require less specific information to encode, and are therefore much more likely to appear as phenotypic variation through random mutations. Arguments from algorithmic information theory can formalise this intuition, leading to the prediction that many genotype-phenotype maps are exponentially biased towards phenotypes with low descriptional complexity. A preference for symmetry is a special case of this bias towards compressible descriptions. We test these predictions with extensive biological data, showing that that protein complexes, RNA secondary structures, and a model gene-regulatory network all exhibit the expected exponential bias towards simpler (and more symmetric) phenotypes. Lower descriptional complexity also correlates with higher mutational robustness, which may aid the evolution of complex modular assemblies of multiple components.

Competing Interest Statement

The authors have declared no competing interest.

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  • supplementary information was missing

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted July 29, 2021.
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Symmetry and simplicity spontaneously emerge from the algorithmic nature of evolution
Iain G Johnston, Kamaludin Dingle, Sam F. Greenbury, Chico Q. Camargo, Jonathan P. K. Doye, Sebastian E. Ahnert, Ard A. Louis
bioRxiv 2021.07.28.454038; doi: https://doi.org/10.1101/2021.07.28.454038
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Symmetry and simplicity spontaneously emerge from the algorithmic nature of evolution
Iain G Johnston, Kamaludin Dingle, Sam F. Greenbury, Chico Q. Camargo, Jonathan P. K. Doye, Sebastian E. Ahnert, Ard A. Louis
bioRxiv 2021.07.28.454038; doi: https://doi.org/10.1101/2021.07.28.454038

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